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CCDC83 (coiled-coil domain containing 83)

Identity

Alias_symbol (synonym)MGC34732
FLJ42119
CT148
Other aliasHSD9
HGNC (Hugo) CCDC83
LocusID (NCBI) 220047
Atlas_Id 53240
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 85566144 and ends at 85631063 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC83 (11q14.1) / PICALM (11q14.2)NELL1 (11p15.1) / CCDC83 (11q14.1)NELL1 11p15.1 / CCDC83 11q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC83   28535
Cards
Entrez_Gene (NCBI)CCDC83  220047  coiled-coil domain containing 83
AliasesCT148; HSD9
GeneCards (Weizmann)CCDC83
Ensembl hg19 (Hinxton)ENSG00000150676 [Gene_View]  chr11:85566144-85631063 [Contig_View]  CCDC83 [Vega]
Ensembl hg38 (Hinxton)ENSG00000150676 [Gene_View]  chr11:85566144-85631063 [Contig_View]  CCDC83 [Vega]
ICGC DataPortalENSG00000150676
TCGA cBioPortalCCDC83
AceView (NCBI)CCDC83
Genatlas (Paris)CCDC83
WikiGenes220047
SOURCE (Princeton)CCDC83
Genetics Home Reference (NIH)CCDC83
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC83  -     chr11:85566144-85631063 +  11q14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC83  -     11q14.1   [Description]    (hg38-Dec_2013)
EnsemblCCDC83 - 11q14.1 [CytoView hg19]  CCDC83 - 11q14.1 [CytoView hg38]
Mapping of homologs : NCBICCDC83 [Mapview hg19]  CCDC83 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA991734 AK093405 AK124113 AK314036 AY251167
RefSeq transcript (Entrez)NM_001286159 NM_173556
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)CCDC83
Cluster EST : UnigeneHs.567774 [ NCBI ]
CGAP (NCI)Hs.567774
Alternative Splicing GalleryENSG00000150676
Gene ExpressionCCDC83 [ NCBI-GEO ]   CCDC83 [ EBI - ARRAY_EXPRESS ]   CCDC83 [ SEEK ]   CCDC83 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC83 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220047
GTEX Portal (Tissue expression)CCDC83
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWF9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWF9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWF9
Splice isoforms : SwissVarQ8IWF9
PhosPhoSitePlusQ8IWF9
Domains : Interpro (EBI)CCDC83   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC83
DMDM Disease mutations220047
Blocks (Seattle)CCDC83
SuperfamilyQ8IWF9
Human Protein AtlasENSG00000150676
Peptide AtlasQ8IWF9
HPRD14586
IPIIPI00293095   IPI00414038   IPI00451623   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWF9
IntAct (EBI)Q8IWF9
FunCoupENSG00000150676
BioGRIDCCDC83
STRING (EMBL)CCDC83
ZODIACCCDC83
Ontologies - Pathways
QuickGOQ8IWF9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC83
Atlas of Cancer Signalling NetworkCCDC83
Wikipedia pathwaysCCDC83
Orthology - Evolution
OrthoDB220047
GeneTree (enSembl)ENSG00000150676
Phylogenetic Trees/Animal Genes : TreeFamCCDC83
HOVERGENQ8IWF9
HOGENOMQ8IWF9
Homologs : HomoloGeneCCDC83
Homology/Alignments : Family Browser (UCSC)CCDC83
Gene fusions - Rearrangements
Fusion : MitelmanNELL1/CCDC83 [11p15.1/11q14.1]  [t(11;11)(p15;q14)]  
Fusion: TCGANELL1 11p15.1 CCDC83 11q14.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC83 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC83
dbVarCCDC83
ClinVarCCDC83
1000_GenomesCCDC83 
Exome Variant ServerCCDC83
ExAC (Exome Aggregation Consortium)CCDC83 (select the gene name)
Genetic variants : HAPMAP220047
Genomic Variants (DGV)CCDC83 [DGVbeta]
DECIPHER (Syndromes)11:85566144-85631063  ENSG00000150676
CONAN: Copy Number AnalysisCCDC83 
Mutations
ICGC Data PortalCCDC83 
TCGA Data PortalCCDC83 
Broad Tumor PortalCCDC83
OASIS PortalCCDC83 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC83  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC83
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC83
DgiDB (Drug Gene Interaction Database)CCDC83
DoCM (Curated mutations)CCDC83 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC83 (select a term)
intoGenCCDC83
Cancer3DCCDC83(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC83
Genetic Testing Registry CCDC83
NextProtQ8IWF9 [Medical]
TSGene220047
GENETestsCCDC83
Huge Navigator CCDC83 [HugePedia]
snp3D : Map Gene to Disease220047
BioCentury BCIQCCDC83
ClinGenCCDC83
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220047
Chemical/Pharm GKB GenePA144596450
Clinical trialCCDC83
Miscellaneous
canSAR (ICR)CCDC83 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC83
EVEXCCDC83
GoPubMedCCDC83
iHOPCCDC83
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:55:17 CEST 2017

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