Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC84 (coiled-coil domain containing 84)

Identity

Alias_symbol (synonym)DLNB14
Other alias
HGNC (Hugo) CCDC84
LocusID (NCBI) 338657
Atlas_Id 61570
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 118998133 and ends at 119015792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AFF1 (4q21.3) / CCDC84 (11q23.3)BIRC6 (2p22.3) / CCDC84 (11q23.3)CCDC84 (11q23.3) / FN1 (2q35)
CCDC84 (11q23.3) / WNK1 (12p13.33)CCNB1 (5q13.2) / CCDC84 (11q23.3)PAFAH1B2 (11q23.3) / CCDC84 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC84   30460
Cards
Entrez_Gene (NCBI)CCDC84  338657  coiled-coil domain containing 84
AliasesDLNB14
GeneCards (Weizmann)CCDC84
Ensembl hg19 (Hinxton)ENSG00000186166 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186166 [Gene_View]  chr11:118998133-119015792 [Contig_View]  CCDC84 [Vega]
ICGC DataPortalENSG00000186166
TCGA cBioPortalCCDC84
AceView (NCBI)CCDC84
Genatlas (Paris)CCDC84
WikiGenes338657
SOURCE (Princeton)CCDC84
Genetics Home Reference (NIH)CCDC84
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC84  -     chr11:118998133-119015792 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC84  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC84 - 11q23.3 [CytoView hg19]  CCDC84 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBICCDC84 [Mapview hg19]  CCDC84 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB094093 AW014772 BC126469 BC126471 BC144208
RefSeq transcript (Entrez)NM_198489
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC84
Cluster EST : UnigeneHs.534613 [ NCBI ]
CGAP (NCI)Hs.534613
Alternative Splicing GalleryENSG00000186166
Gene ExpressionCCDC84 [ NCBI-GEO ]   CCDC84 [ EBI - ARRAY_EXPRESS ]   CCDC84 [ SEEK ]   CCDC84 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC84 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338657
GTEX Portal (Tissue expression)CCDC84
Human Protein AtlasENSG00000186166-CCDC84 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UT8
Splice isoforms : SwissVarQ86UT8
PhosPhoSitePlusQ86UT8
Domains : Interpro (EBI)CCDC84   
Domain families : Pfam (Sanger)CCDC84 (PF14968)   
Domain families : Pfam (NCBI)pfam14968   
Conserved Domain (NCBI)CCDC84
DMDM Disease mutations338657
Blocks (Seattle)CCDC84
SuperfamilyQ86UT8
Human Protein Atlas [tissue]ENSG00000186166-CCDC84 [tissue]
Peptide AtlasQ86UT8
HPRD13234
IPIIPI00328794   IPI00981439   IPI00980762   
Protein Interaction databases
DIP (DOE-UCLA)Q86UT8
IntAct (EBI)Q86UT8
FunCoupENSG00000186166
BioGRIDCCDC84
STRING (EMBL)CCDC84
ZODIACCCDC84
Ontologies - Pathways
QuickGOQ86UT8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC84
Atlas of Cancer Signalling NetworkCCDC84
Wikipedia pathwaysCCDC84
Orthology - Evolution
OrthoDB338657
GeneTree (enSembl)ENSG00000186166
Phylogenetic Trees/Animal Genes : TreeFamCCDC84
HOVERGENQ86UT8
HOGENOMQ86UT8
Homologs : HomoloGeneCCDC84
Homology/Alignments : Family Browser (UCSC)CCDC84
Gene fusions - Rearrangements
Fusion: Tumor Portal CCDC84
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC84 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC84
dbVarCCDC84
ClinVarCCDC84
1000_GenomesCCDC84 
Exome Variant ServerCCDC84
ExAC (Exome Aggregation Consortium)ENSG00000186166
GNOMAD BrowserENSG00000186166
Genetic variants : HAPMAP338657
Genomic Variants (DGV)CCDC84 [DGVbeta]
DECIPHERCCDC84 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC84 
Mutations
ICGC Data PortalCCDC84 
TCGA Data PortalCCDC84 
Broad Tumor PortalCCDC84
OASIS PortalCCDC84 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC84  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC84
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC84
DgiDB (Drug Gene Interaction Database)CCDC84
DoCM (Curated mutations)CCDC84 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC84 (select a term)
intoGenCCDC84
Cancer3DCCDC84(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC84
Genetic Testing Registry CCDC84
NextProtQ86UT8 [Medical]
TSGene338657
GENETestsCCDC84
Target ValidationCCDC84
Huge Navigator CCDC84 [HugePedia]
snp3D : Map Gene to Disease338657
BioCentury BCIQCCDC84
ClinGenCCDC84
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338657
Chemical/Pharm GKB GenePA144596451
Clinical trialCCDC84
Miscellaneous
canSAR (ICR)CCDC84 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC84
EVEXCCDC84
GoPubMedCCDC84
iHOPCCDC84
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:41:51 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.