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CCDC85A (coiled-coil domain containing 85A)

Identity

Alias_symbol (synonym)KIAA1912
Other alias-
HGNC (Hugo) CCDC85A
LocusID (NCBI) 114800
Atlas_Id 61571
Location 2p16.1  [Link to chromosome band 2p16]
Location_base_pair Starts at 56411258 and ends at 56613309 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC85A   29400
Cards
Entrez_Gene (NCBI)CCDC85A  114800  coiled-coil domain containing 85A
Aliases
GeneCards (Weizmann)CCDC85A
Ensembl hg19 (Hinxton)ENSG00000055813 [Gene_View]  chr2:56411258-56613309 [Contig_View]  CCDC85A [Vega]
Ensembl hg38 (Hinxton)ENSG00000055813 [Gene_View]  chr2:56411258-56613309 [Contig_View]  CCDC85A [Vega]
ICGC DataPortalENSG00000055813
TCGA cBioPortalCCDC85A
AceView (NCBI)CCDC85A
Genatlas (Paris)CCDC85A
WikiGenes114800
SOURCE (Princeton)CCDC85A
Genetics Home Reference (NIH)CCDC85A
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC85A  -     chr2:56411258-56613309 +  2p16.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC85A  -     2p16.1   [Description]    (hg38-Dec_2013)
EnsemblCCDC85A - 2p16.1 [CytoView hg19]  CCDC85A - 2p16.1 [CytoView hg38]
Mapping of homologs : NCBICCDC85A [Mapview hg19]  CCDC85A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067499 BC131557 BC156395 BC157123
RefSeq transcript (Entrez)NM_001080433
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)CCDC85A
Cluster EST : UnigeneHs.117136 [ NCBI ]
CGAP (NCI)Hs.117136
Alternative Splicing GalleryENSG00000055813
Gene ExpressionCCDC85A [ NCBI-GEO ]   CCDC85A [ EBI - ARRAY_EXPRESS ]   CCDC85A [ SEEK ]   CCDC85A [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC85A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114800
GTEX Portal (Tissue expression)CCDC85A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PX6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PX6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PX6
Splice isoforms : SwissVarQ96PX6
PhosPhoSitePlusQ96PX6
Domains : Interpro (EBI)DUF2216_coiled-coil   
Domain families : Pfam (Sanger)DUF2216 (PF10226)   
Domain families : Pfam (NCBI)pfam10226   
Conserved Domain (NCBI)CCDC85A
DMDM Disease mutations114800
Blocks (Seattle)CCDC85A
SuperfamilyQ96PX6
Human Protein AtlasENSG00000055813
Peptide AtlasQ96PX6
IPIIPI00289837   IPI00830115   
Protein Interaction databases
DIP (DOE-UCLA)Q96PX6
IntAct (EBI)Q96PX6
FunCoupENSG00000055813
BioGRIDCCDC85A
STRING (EMBL)CCDC85A
ZODIACCCDC85A
Ontologies - Pathways
QuickGOQ96PX6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC85A
Atlas of Cancer Signalling NetworkCCDC85A
Wikipedia pathwaysCCDC85A
Orthology - Evolution
OrthoDB114800
GeneTree (enSembl)ENSG00000055813
Phylogenetic Trees/Animal Genes : TreeFamCCDC85A
HOVERGENQ96PX6
HOGENOMQ96PX6
Homologs : HomoloGeneCCDC85A
Homology/Alignments : Family Browser (UCSC)CCDC85A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC85A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC85A
dbVarCCDC85A
ClinVarCCDC85A
1000_GenomesCCDC85A 
Exome Variant ServerCCDC85A
ExAC (Exome Aggregation Consortium)CCDC85A (select the gene name)
Genetic variants : HAPMAP114800
Genomic Variants (DGV)CCDC85A [DGVbeta]
DECIPHER (Syndromes)2:56411258-56613309  ENSG00000055813
CONAN: Copy Number AnalysisCCDC85A 
Mutations
ICGC Data PortalCCDC85A 
TCGA Data PortalCCDC85A 
Broad Tumor PortalCCDC85A
OASIS PortalCCDC85A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC85A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC85A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC85A
DgiDB (Drug Gene Interaction Database)CCDC85A
DoCM (Curated mutations)CCDC85A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC85A (select a term)
intoGenCCDC85A
Cancer3DCCDC85A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC85A
Genetic Testing Registry CCDC85A
NextProtQ96PX6 [Medical]
TSGene114800
GENETestsCCDC85A
Huge Navigator CCDC85A [HugePedia]
snp3D : Map Gene to Disease114800
BioCentury BCIQCCDC85A
ClinGenCCDC85A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114800
Chemical/Pharm GKB GenePA144596452
Clinical trialCCDC85A
Miscellaneous
canSAR (ICR)CCDC85A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC85A
EVEXCCDC85A
GoPubMedCCDC85A
iHOPCCDC85A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:41 CET 2017

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