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CCDC85B (coiled-coil domain containing 85B)

Identity

Alias_symbol (synonym)DIPA
Other alias
HGNC (Hugo) CCDC85B
LocusID (NCBI) 11007
Atlas_Id 61572
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65890404 and ends at 65891635 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC85B   24926
Cards
Entrez_Gene (NCBI)CCDC85B  11007  coiled-coil domain containing 85B
AliasesDIPA
GeneCards (Weizmann)CCDC85B
Ensembl hg19 (Hinxton)ENSG00000175602 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175602 [Gene_View]  chr11:65890404-65891635 [Contig_View]  CCDC85B [Vega]
ICGC DataPortalENSG00000175602
TCGA cBioPortalCCDC85B
AceView (NCBI)CCDC85B
Genatlas (Paris)CCDC85B
WikiGenes11007
SOURCE (Princeton)CCDC85B
Genetics Home Reference (NIH)CCDC85B
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC85B  -     chr11:65890404-65891635 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC85B  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC85B - 11q13.1 [CytoView hg19]  CCDC85B - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBICCDC85B [Mapview hg19]  CCDC85B [Mapview hg38]
OMIM605360   
Gene and transcription
Genbank (Entrez)AI583181 AK312109 BC008796 HQ447941 U63825
RefSeq transcript (Entrez)NM_006848
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC85B
Cluster EST : UnigeneHs.66713 [ NCBI ]
CGAP (NCI)Hs.66713
Alternative Splicing GalleryENSG00000175602
Gene ExpressionCCDC85B [ NCBI-GEO ]   CCDC85B [ EBI - ARRAY_EXPRESS ]   CCDC85B [ SEEK ]   CCDC85B [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC85B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11007
GTEX Portal (Tissue expression)CCDC85B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15834   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15834  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15834
Splice isoforms : SwissVarQ15834
PhosPhoSitePlusQ15834
Domains : Interpro (EBI)CCDC85   
Domain families : Pfam (Sanger)CCDC85 (PF10226)   
Domain families : Pfam (NCBI)pfam10226   
Conserved Domain (NCBI)CCDC85B
DMDM Disease mutations11007
Blocks (Seattle)CCDC85B
SuperfamilyQ15834
Human Protein AtlasENSG00000175602
Peptide AtlasQ15834
HPRD16101
IPIIPI00019976   
Protein Interaction databases
DIP (DOE-UCLA)Q15834
IntAct (EBI)Q15834
FunCoupENSG00000175602
BioGRIDCCDC85B
STRING (EMBL)CCDC85B
ZODIACCCDC85B
Ontologies - Pathways
QuickGOQ15834
Ontology : AmiGOprotein binding  nucleus  cytoplasm  centrosome  transcription, DNA-templated  cell differentiation  negative regulation of cell growth  negative regulation of fat cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  centrosome  transcription, DNA-templated  cell differentiation  negative regulation of cell growth  negative regulation of fat cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkCCDC85B
Atlas of Cancer Signalling NetworkCCDC85B
Wikipedia pathwaysCCDC85B
Orthology - Evolution
OrthoDB11007
GeneTree (enSembl)ENSG00000175602
Phylogenetic Trees/Animal Genes : TreeFamCCDC85B
HOVERGENQ15834
HOGENOMQ15834
Homologs : HomoloGeneCCDC85B
Homology/Alignments : Family Browser (UCSC)CCDC85B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC85B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC85B
dbVarCCDC85B
ClinVarCCDC85B
1000_GenomesCCDC85B 
Exome Variant ServerCCDC85B
ExAC (Exome Aggregation Consortium)CCDC85B (select the gene name)
Genetic variants : HAPMAP11007
Genomic Variants (DGV)CCDC85B [DGVbeta]
DECIPHERCCDC85B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC85B 
Mutations
ICGC Data PortalCCDC85B 
TCGA Data PortalCCDC85B 
Broad Tumor PortalCCDC85B
OASIS PortalCCDC85B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC85B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC85B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC85B
DgiDB (Drug Gene Interaction Database)CCDC85B
DoCM (Curated mutations)CCDC85B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC85B (select a term)
intoGenCCDC85B
Cancer3DCCDC85B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605360   
Orphanet
MedgenCCDC85B
Genetic Testing Registry CCDC85B
NextProtQ15834 [Medical]
TSGene11007
GENETestsCCDC85B
Target ValidationCCDC85B
Huge Navigator CCDC85B [HugePedia]
snp3D : Map Gene to Disease11007
BioCentury BCIQCCDC85B
ClinGenCCDC85B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11007
Chemical/Pharm GKB GenePA144596453
Clinical trialCCDC85B
Miscellaneous
canSAR (ICR)CCDC85B (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC85B
EVEXCCDC85B
GoPubMedCCDC85B
iHOPCCDC85B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:16 CEST 2017

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