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CCDC85C (coiled-coil domain containing 85C)

Identity

Alias (NCBI)-
HGNC (Hugo) CCDC85C
LocusID (NCBI) 317762
Atlas_Id 54201
Location 14q32.2  [Link to chromosome band 14q32]
Location_base_pair Starts at 99500190 and ends at 99604207 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC85C (14q32.2) / SETD3 (14q32.2)FUT8 (14q23.3) / CCDC85C (14q32.2)FUT8 14q23.3 / CCDC85C 14q32.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(14;14)(q23;q32) FUT8/CCDC85C
CCDC85C/SETD3 (14q32)


External links

Nomenclature
HGNC (Hugo)CCDC85C   35459
Cards
Entrez_Gene (NCBI)CCDC85C    coiled-coil domain containing 85C
Aliases
GeneCards (Weizmann)CCDC85C
Ensembl hg19 (Hinxton)ENSG00000205476 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205476 [Gene_View]  ENSG00000205476 [Sequence]  chr14:99500190-99604207 [Contig_View]  CCDC85C [Vega]
ICGC DataPortalENSG00000205476
TCGA cBioPortalCCDC85C
AceView (NCBI)CCDC85C
Genatlas (Paris)CCDC85C
SOURCE (Princeton)CCDC85C
Genetics Home Reference (NIH)CCDC85C
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC85C  -     chr14:99500190-99604207 -  14q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC85C  -     14q32.2   [Description]    (hg19-Feb_2009)
GoldenPathCCDC85C - 14q32.2 [CytoView hg19]  CCDC85C - 14q32.2 [CytoView hg38]
ImmunoBaseENSG00000205476
genome Data Viewer NCBICCDC85C [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK026211 AK093969 AK096927 AK123840 BC029998
RefSeq transcript (Entrez)NM_001144995
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC85C
Alternative Splicing GalleryENSG00000205476
Gene ExpressionCCDC85C [ NCBI-GEO ]   CCDC85C [ EBI - ARRAY_EXPRESS ]   CCDC85C [ SEEK ]   CCDC85C [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC85C [ Firebrowse - Broad ]
GenevisibleExpression of CCDC85C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)317762
GTEX Portal (Tissue expression)CCDC85C
Human Protein AtlasENSG00000205476-CCDC85C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKD9
Splice isoforms : SwissVarA6NKD9
PhosPhoSitePlusA6NKD9
Domains : Interpro (EBI)CCDC85   
Domain families : Pfam (Sanger)CCDC85 (PF10226)   
Domain families : Pfam (NCBI)pfam10226   
Conserved Domain (NCBI)CCDC85C
Blocks (Seattle)CCDC85C
SuperfamilyA6NKD9
Human Protein Atlas [tissue]ENSG00000205476-CCDC85C [tissue]
Peptide AtlasA6NKD9
IPIIPI00657798   IPI01025188   IPI01025755   IPI01024765   IPI01026521   IPI01026313   
Protein Interaction databases
DIP (DOE-UCLA)A6NKD9
IntAct (EBI)A6NKD9
BioGRIDCCDC85C
STRING (EMBL)CCDC85C
ZODIACCCDC85C
Ontologies - Pathways
QuickGOA6NKD9
Ontology : AmiGOadherens junction  bicellular tight junction  cerebral cortex development  apical junction complex  
Ontology : EGO-EBIadherens junction  bicellular tight junction  cerebral cortex development  apical junction complex  
NDEx NetworkCCDC85C
Atlas of Cancer Signalling NetworkCCDC85C
Wikipedia pathwaysCCDC85C
Orthology - Evolution
OrthoDB317762
GeneTree (enSembl)ENSG00000205476
Phylogenetic Trees/Animal Genes : TreeFamCCDC85C
HOGENOMA6NKD9
Homologs : HomoloGeneCCDC85C
Homology/Alignments : Family Browser (UCSC)CCDC85C
Gene fusions - Rearrangements
Fusion : MitelmanCCDC85C/SETD3 [14q32.2/14q32.2]  
Fusion : MitelmanFUT8/CCDC85C [14q23.3/14q32.2]  
Fusion PortalFUT8 14q23.3 CCDC85C 14q32.2 OV
Fusion : QuiverCCDC85C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC85C [hg38]
dbVarCCDC85C
ClinVarCCDC85C
MonarchCCDC85C
1000_GenomesCCDC85C 
Exome Variant ServerCCDC85C
GNOMAD BrowserENSG00000205476
Varsome BrowserCCDC85C
Genomic Variants (DGV)CCDC85C [DGVbeta]
DECIPHERCCDC85C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC85C 
Mutations
ICGC Data PortalCCDC85C 
TCGA Data PortalCCDC85C 
Broad Tumor PortalCCDC85C
OASIS PortalCCDC85C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC85C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCDC85C
Mutations and Diseases : HGMDCCDC85C
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CCDC85C
DgiDB (Drug Gene Interaction Database)CCDC85C
DoCM (Curated mutations)CCDC85C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC85C (select a term)
intoGenCCDC85C
Cancer3DCCDC85C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC85C
MedgenCCDC85C
Genetic Testing Registry CCDC85C
NextProtA6NKD9 [Medical]
GENETestsCCDC85C
Target ValidationCCDC85C
Huge Navigator CCDC85C [HugePedia]
ClinGenCCDC85C
Clinical trials, drugs, therapy
MyCancerGenomeCCDC85C
Protein Interactions : CTD
Pharm GKB GenePA164717760
PharosA6NKD9
Clinical trialCCDC85C
Miscellaneous
canSAR (ICR)CCDC85C (select the gene name)
HarmonizomeCCDC85C
DataMed IndexCCDC85C
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCDC85C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:08:40 CET 2021

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