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CCDC85C (coiled-coil domain containing 85C)

Identity

Other alias-
HGNC (Hugo) CCDC85C
LocusID (NCBI) 317762
Atlas_Id 54201
Location 14q32.2  [Link to chromosome band 14q32]
Location_base_pair Starts at 99511266 and ends at 99604390 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC85C (14q32.2) / SETD3 (14q32.2)FUT8 (14q23.3) / CCDC85C (14q32.2)FUT8 14q23.3 / CCDC85C 14q32.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC85C   35459
Cards
Entrez_Gene (NCBI)CCDC85C  317762  coiled-coil domain containing 85C
Aliases
GeneCards (Weizmann)CCDC85C
Ensembl hg19 (Hinxton)ENSG00000205476 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205476 [Gene_View]  chr14:99511266-99604390 [Contig_View]  CCDC85C [Vega]
ICGC DataPortalENSG00000205476
TCGA cBioPortalCCDC85C
AceView (NCBI)CCDC85C
Genatlas (Paris)CCDC85C
WikiGenes317762
SOURCE (Princeton)CCDC85C
Genetics Home Reference (NIH)CCDC85C
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC85C  -     chr14:99511266-99604390 -  14q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC85C  -     14q32.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC85C - 14q32.2 [CytoView hg19]  CCDC85C - 14q32.2 [CytoView hg38]
Mapping of homologs : NCBICCDC85C [Mapview hg19]  CCDC85C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026211 AK093969 AK096927 AK123840 BC029998
RefSeq transcript (Entrez)NM_001144995
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC85C
Cluster EST : UnigeneHs.709288 [ NCBI ]
CGAP (NCI)Hs.709288
Alternative Splicing GalleryENSG00000205476
Gene ExpressionCCDC85C [ NCBI-GEO ]   CCDC85C [ EBI - ARRAY_EXPRESS ]   CCDC85C [ SEEK ]   CCDC85C [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC85C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)317762
GTEX Portal (Tissue expression)CCDC85C
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKD9
Splice isoforms : SwissVarA6NKD9
PhosPhoSitePlusA6NKD9
Domains : Interpro (EBI)CCDC85   
Domain families : Pfam (Sanger)CCDC85 (PF10226)   
Domain families : Pfam (NCBI)pfam10226   
Conserved Domain (NCBI)CCDC85C
DMDM Disease mutations317762
Blocks (Seattle)CCDC85C
SuperfamilyA6NKD9
Human Protein AtlasENSG00000205476
Peptide AtlasA6NKD9
IPIIPI00657798   IPI01025188   IPI01025755   IPI01024765   IPI01026521   IPI01026313   
Protein Interaction databases
DIP (DOE-UCLA)A6NKD9
IntAct (EBI)A6NKD9
FunCoupENSG00000205476
BioGRIDCCDC85C
STRING (EMBL)CCDC85C
ZODIACCCDC85C
Ontologies - Pathways
QuickGOA6NKD9
Ontology : AmiGObicellular tight junction  cerebral cortex development  apical junction complex  
Ontology : EGO-EBIbicellular tight junction  cerebral cortex development  apical junction complex  
NDEx NetworkCCDC85C
Atlas of Cancer Signalling NetworkCCDC85C
Wikipedia pathwaysCCDC85C
Orthology - Evolution
OrthoDB317762
GeneTree (enSembl)ENSG00000205476
Phylogenetic Trees/Animal Genes : TreeFamCCDC85C
HOVERGENA6NKD9
HOGENOMA6NKD9
Homologs : HomoloGeneCCDC85C
Homology/Alignments : Family Browser (UCSC)CCDC85C
Gene fusions - Rearrangements
Fusion : MitelmanCCDC85C/SETD3 [14q32.2/14q32.2]  
Fusion : MitelmanFUT8/CCDC85C [14q23.3/14q32.2]  [t(14;14)(q23;q32)]  
Fusion: TCGAFUT8 14q23.3 CCDC85C 14q32.2 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC85C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC85C
dbVarCCDC85C
ClinVarCCDC85C
1000_GenomesCCDC85C 
Exome Variant ServerCCDC85C
ExAC (Exome Aggregation Consortium)CCDC85C (select the gene name)
Genetic variants : HAPMAP317762
Genomic Variants (DGV)CCDC85C [DGVbeta]
DECIPHERCCDC85C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC85C 
Mutations
ICGC Data PortalCCDC85C 
TCGA Data PortalCCDC85C 
Broad Tumor PortalCCDC85C
OASIS PortalCCDC85C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC85C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC85C
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CCDC85C
DgiDB (Drug Gene Interaction Database)CCDC85C
DoCM (Curated mutations)CCDC85C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC85C (select a term)
intoGenCCDC85C
Cancer3DCCDC85C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC85C
Genetic Testing Registry CCDC85C
NextProtA6NKD9 [Medical]
TSGene317762
GENETestsCCDC85C
Huge Navigator CCDC85C [HugePedia]
snp3D : Map Gene to Disease317762
BioCentury BCIQCCDC85C
ClinGenCCDC85C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD317762
Chemical/Pharm GKB GenePA164717760
Clinical trialCCDC85C
Miscellaneous
canSAR (ICR)CCDC85C (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC85C
EVEXCCDC85C
GoPubMedCCDC85C
iHOPCCDC85C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:09:12 CEST 2017

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