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CCDC86 (coiled-coil domain containing 86)

Identity

Alias_symbol (synonym)MGC2574
Other alias-
HGNC (Hugo) CCDC86
LocusID (NCBI) 79080
Atlas_Id 61573
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 60841956 and ends at 60851088 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MOSPD3 (7q22.1) / CCDC86 (11q12.2)NTM (11q25) / CCDC86 (11q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC86   28359
Cards
Entrez_Gene (NCBI)CCDC86  79080  coiled-coil domain containing 86
Aliases
GeneCards (Weizmann)CCDC86
Ensembl hg19 (Hinxton)ENSG00000110104 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110104 [Gene_View]  chr11:60841956-60851088 [Contig_View]  CCDC86 [Vega]
ICGC DataPortalENSG00000110104
TCGA cBioPortalCCDC86
AceView (NCBI)CCDC86
Genatlas (Paris)CCDC86
WikiGenes79080
SOURCE (Princeton)CCDC86
Genetics Home Reference (NIH)CCDC86
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC86  -     chr11:60841956-60851088 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC86  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC86 - 11q12.2 [CytoView hg19]  CCDC86 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBICCDC86 [Mapview hg19]  CCDC86 [Mapview hg38]
OMIM611293   
Gene and transcription
Genbank (Entrez)AI018490 AK025974 AK123775 AK302329 BC001378
RefSeq transcript (Entrez)NM_024098
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC86
Cluster EST : UnigeneHs.4253 [ NCBI ]
CGAP (NCI)Hs.4253
Alternative Splicing GalleryENSG00000110104
Gene ExpressionCCDC86 [ NCBI-GEO ]   CCDC86 [ EBI - ARRAY_EXPRESS ]   CCDC86 [ SEEK ]   CCDC86 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC86 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79080
GTEX Portal (Tissue expression)CCDC86
Human Protein AtlasENSG00000110104-CCDC86 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6F5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6F5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6F5
Splice isoforms : SwissVarQ9H6F5
PhosPhoSitePlusQ9H6F5
Domains : Interpro (EBI)CCDC86    Cgr1-like   
Domain families : Pfam (Sanger)Cgr1 (PF03879)   
Domain families : Pfam (NCBI)pfam03879   
Conserved Domain (NCBI)CCDC86
DMDM Disease mutations79080
Blocks (Seattle)CCDC86
SuperfamilyQ9H6F5
Human Protein Atlas [tissue]ENSG00000110104-CCDC86 [tissue]
Peptide AtlasQ9H6F5
HPRD08322
IPIIPI00012199   IPI00412260   IPI01009116   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6F5
IntAct (EBI)Q9H6F5
FunCoupENSG00000110104
BioGRIDCCDC86
STRING (EMBL)CCDC86
ZODIACCCDC86
Ontologies - Pathways
QuickGOQ9H6F5
Ontology : AmiGORNA binding  protein binding  nucleus  nucleolus  viral process  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleolus  viral process  
NDEx NetworkCCDC86
Atlas of Cancer Signalling NetworkCCDC86
Wikipedia pathwaysCCDC86
Orthology - Evolution
OrthoDB79080
GeneTree (enSembl)ENSG00000110104
Phylogenetic Trees/Animal Genes : TreeFamCCDC86
HOVERGENQ9H6F5
HOGENOMQ9H6F5
Homologs : HomoloGeneCCDC86
Homology/Alignments : Family Browser (UCSC)CCDC86
Gene fusions - Rearrangements
Fusion: Tumor Portal CCDC86
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC86 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC86
dbVarCCDC86
ClinVarCCDC86
1000_GenomesCCDC86 
Exome Variant ServerCCDC86
ExAC (Exome Aggregation Consortium)ENSG00000110104
GNOMAD BrowserENSG00000110104
Genetic variants : HAPMAP79080
Genomic Variants (DGV)CCDC86 [DGVbeta]
DECIPHERCCDC86 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC86 
Mutations
ICGC Data PortalCCDC86 
TCGA Data PortalCCDC86 
Broad Tumor PortalCCDC86
OASIS PortalCCDC86 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC86  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC86
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC86
DgiDB (Drug Gene Interaction Database)CCDC86
DoCM (Curated mutations)CCDC86 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC86 (select a term)
intoGenCCDC86
Cancer3DCCDC86(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611293   
Orphanet
MedgenCCDC86
Genetic Testing Registry CCDC86
NextProtQ9H6F5 [Medical]
TSGene79080
GENETestsCCDC86
Target ValidationCCDC86
Huge Navigator CCDC86 [HugePedia]
snp3D : Map Gene to Disease79080
BioCentury BCIQCCDC86
ClinGenCCDC86
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79080
Chemical/Pharm GKB GenePA144596454
Clinical trialCCDC86
Miscellaneous
canSAR (ICR)CCDC86 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC86
EVEXCCDC86
GoPubMedCCDC86
iHOPCCDC86
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:41:52 CET 2017

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