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CCDC87 (coiled-coil domain containing 87)

Identity

Alias_symbol (synonym)FLJ10786
Other alias-
HGNC (Hugo) CCDC87
LocusID (NCBI) 55231
Atlas_Id 61574
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 66590169 and ends at 66593083 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC87   25579
Cards
Entrez_Gene (NCBI)CCDC87  55231  coiled-coil domain containing 87
Aliases
GeneCards (Weizmann)CCDC87
Ensembl hg19 (Hinxton)ENSG00000182791 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182791 [Gene_View]  chr11:66590169-66593083 [Contig_View]  CCDC87 [Vega]
ICGC DataPortalENSG00000182791
TCGA cBioPortalCCDC87
AceView (NCBI)CCDC87
Genatlas (Paris)CCDC87
WikiGenes55231
SOURCE (Princeton)CCDC87
Genetics Home Reference (NIH)CCDC87
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC87  -     chr11:66590169-66593083 -  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC87  -     11q13.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC87 - 11q13.2 [CytoView hg19]  CCDC87 - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBICCDC87 [Mapview hg19]  CCDC87 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI391530 AK001648 BC034469
RefSeq transcript (Entrez)NM_018219
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC87
Cluster EST : UnigeneHs.121072 [ NCBI ]
CGAP (NCI)Hs.121072
Alternative Splicing GalleryENSG00000182791
Gene ExpressionCCDC87 [ NCBI-GEO ]   CCDC87 [ EBI - ARRAY_EXPRESS ]   CCDC87 [ SEEK ]   CCDC87 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC87 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55231
GTEX Portal (Tissue expression)CCDC87
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVE4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVE4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVE4
Splice isoforms : SwissVarQ9NVE4
PhosPhoSitePlusQ9NVE4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC87
DMDM Disease mutations55231
Blocks (Seattle)CCDC87
SuperfamilyQ9NVE4
Human Protein AtlasENSG00000182791
Peptide AtlasQ9NVE4
HPRD07699
IPIIPI00302151   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVE4
IntAct (EBI)Q9NVE4
FunCoupENSG00000182791
BioGRIDCCDC87
STRING (EMBL)CCDC87
ZODIACCCDC87
Ontologies - Pathways
QuickGOQ9NVE4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC87
Atlas of Cancer Signalling NetworkCCDC87
Wikipedia pathwaysCCDC87
Orthology - Evolution
OrthoDB55231
GeneTree (enSembl)ENSG00000182791
Phylogenetic Trees/Animal Genes : TreeFamCCDC87
HOVERGENQ9NVE4
HOGENOMQ9NVE4
Homologs : HomoloGeneCCDC87
Homology/Alignments : Family Browser (UCSC)CCDC87
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC87 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC87
dbVarCCDC87
ClinVarCCDC87
1000_GenomesCCDC87 
Exome Variant ServerCCDC87
ExAC (Exome Aggregation Consortium)CCDC87 (select the gene name)
Genetic variants : HAPMAP55231
Genomic Variants (DGV)CCDC87 [DGVbeta]
DECIPHERCCDC87 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC87 
Mutations
ICGC Data PortalCCDC87 
TCGA Data PortalCCDC87 
Broad Tumor PortalCCDC87
OASIS PortalCCDC87 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC87  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC87
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC87
DgiDB (Drug Gene Interaction Database)CCDC87
DoCM (Curated mutations)CCDC87 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC87 (select a term)
intoGenCCDC87
Cancer3DCCDC87(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC87
Genetic Testing Registry CCDC87
NextProtQ9NVE4 [Medical]
TSGene55231
GENETestsCCDC87
Huge Navigator CCDC87 [HugePedia]
snp3D : Map Gene to Disease55231
BioCentury BCIQCCDC87
ClinGenCCDC87
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55231
Chemical/Pharm GKB GenePA144596455
Clinical trialCCDC87
Miscellaneous
canSAR (ICR)CCDC87 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC87
EVEXCCDC87
GoPubMedCCDC87
iHOPCCDC87
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:05:02 CEST 2017

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