Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC89 (coiled-coil domain containing 89)

Identity

Alias_symbol (synonym)FLJ38159
Other alias-
HGNC (Hugo) CCDC89
LocusID (NCBI) 220388
Atlas_Id 61576
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 85394887 and ends at 85397320 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC89   26762
Cards
Entrez_Gene (NCBI)CCDC89  220388  coiled-coil domain containing 89
Aliases
GeneCards (Weizmann)CCDC89
Ensembl hg19 (Hinxton) [Gene_View]  chr11:85394887-85397320 [Contig_View]  CCDC89 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:85394887-85397320 [Contig_View]  CCDC89 [Vega]
TCGA cBioPortalCCDC89
AceView (NCBI)CCDC89
Genatlas (Paris)CCDC89
WikiGenes220388
SOURCE (Princeton)CCDC89
Genetics Home Reference (NIH)CCDC89
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC89  -     chr11:85394887-85397320 -  11q14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC89  -     11q14.1   [Description]    (hg38-Dec_2013)
EnsemblCCDC89 - 11q14.1 [CytoView hg19]  CCDC89 - 11q14.1 [CytoView hg38]
Mapping of homologs : NCBICCDC89 [Mapview hg19]  CCDC89 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095478 BC044814 BI559499 DB509087
RefSeq transcript (Entrez)NM_152723
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)CCDC89
Cluster EST : UnigeneHs.376241 [ NCBI ]
CGAP (NCI)Hs.376241
Gene ExpressionCCDC89 [ NCBI-GEO ]   CCDC89 [ EBI - ARRAY_EXPRESS ]   CCDC89 [ SEEK ]   CCDC89 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC89 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220388
GTEX Portal (Tissue expression)CCDC89
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N998   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N998  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N998
Splice isoforms : SwissVarQ8N998
PhosPhoSitePlusQ8N998
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC89
DMDM Disease mutations220388
Blocks (Seattle)CCDC89
SuperfamilyQ8N998
Peptide AtlasQ8N998
HPRD08234
IPIIPI00167663   
Protein Interaction databases
DIP (DOE-UCLA)Q8N998
IntAct (EBI)Q8N998
BioGRIDCCDC89
STRING (EMBL)CCDC89
ZODIACCCDC89
Ontologies - Pathways
QuickGOQ8N998
Ontology : AmiGOnucleus  cytoplasm  
Ontology : EGO-EBInucleus  cytoplasm  
NDEx NetworkCCDC89
Atlas of Cancer Signalling NetworkCCDC89
Wikipedia pathwaysCCDC89
Orthology - Evolution
OrthoDB220388
Phylogenetic Trees/Animal Genes : TreeFamCCDC89
HOVERGENQ8N998
HOGENOMQ8N998
Homologs : HomoloGeneCCDC89
Homology/Alignments : Family Browser (UCSC)CCDC89
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC89 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC89
dbVarCCDC89
ClinVarCCDC89
1000_GenomesCCDC89 
Exome Variant ServerCCDC89
ExAC (Exome Aggregation Consortium)CCDC89 (select the gene name)
Genetic variants : HAPMAP220388
Genomic Variants (DGV)CCDC89 [DGVbeta]
DECIPHER (Syndromes)11:85394887-85397320  
CONAN: Copy Number AnalysisCCDC89 
Mutations
ICGC Data PortalCCDC89 
TCGA Data PortalCCDC89 
Broad Tumor PortalCCDC89
OASIS PortalCCDC89 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC89  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC89
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC89
DgiDB (Drug Gene Interaction Database)CCDC89
DoCM (Curated mutations)CCDC89 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC89 (select a term)
intoGenCCDC89
Cancer3DCCDC89(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC89
Genetic Testing Registry CCDC89
NextProtQ8N998 [Medical]
TSGene220388
GENETestsCCDC89
Huge Navigator CCDC89 [HugePedia]
snp3D : Map Gene to Disease220388
BioCentury BCIQCCDC89
ClinGenCCDC89
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220388
Chemical/Pharm GKB GenePA144596457
Clinical trialCCDC89
Miscellaneous
canSAR (ICR)CCDC89 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC89
EVEXCCDC89
GoPubMedCCDC89
iHOPCCDC89
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:58:42 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.