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CCDC9 (coiled-coil domain containing 9)

Identity

Alias_symbol (synonym)DKFZP586M1019
Other alias-
HGNC (Hugo) CCDC9
LocusID (NCBI) 26093
Atlas_Id 54202
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 47256474 and ends at 47271953 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC9 (19q13.32) / DHX34 (19q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC9   24560
Cards
Entrez_Gene (NCBI)CCDC9  26093  coiled-coil domain containing 9
Aliases
GeneCards (Weizmann)CCDC9
Ensembl hg19 (Hinxton)ENSG00000105321 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105321 [Gene_View]  chr19:47256474-47271953 [Contig_View]  CCDC9 [Vega]
ICGC DataPortalENSG00000105321
TCGA cBioPortalCCDC9
AceView (NCBI)CCDC9
Genatlas (Paris)CCDC9
WikiGenes26093
SOURCE (Princeton)CCDC9
Genetics Home Reference (NIH)CCDC9
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC9  -     chr19:47256474-47271953 +  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC9  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblCCDC9 - 19q13.32 [CytoView hg19]  CCDC9 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBICCDC9 [Mapview hg19]  CCDC9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK302153 AL050284 BC002787 BC009743 BM737911
RefSeq transcript (Entrez)NM_015603
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC9
Cluster EST : UnigeneHs.227782 [ NCBI ]
CGAP (NCI)Hs.227782
Alternative Splicing GalleryENSG00000105321
Gene ExpressionCCDC9 [ NCBI-GEO ]   CCDC9 [ EBI - ARRAY_EXPRESS ]   CCDC9 [ SEEK ]   CCDC9 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26093
GTEX Portal (Tissue expression)CCDC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3X0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3X0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3X0
Splice isoforms : SwissVarQ9Y3X0
PhosPhoSitePlusQ9Y3X0
Domains : Interpro (EBI)DUF4594   
Domain families : Pfam (Sanger)DUF4594 (PF15266)   
Domain families : Pfam (NCBI)pfam15266   
Conserved Domain (NCBI)CCDC9
DMDM Disease mutations26093
Blocks (Seattle)CCDC9
SuperfamilyQ9Y3X0
Human Protein AtlasENSG00000105321
Peptide AtlasQ9Y3X0
HPRD10813
IPIIPI00177642   IPI01009830   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3X0
IntAct (EBI)Q9Y3X0
FunCoupENSG00000105321
BioGRIDCCDC9
STRING (EMBL)CCDC9
ZODIACCCDC9
Ontologies - Pathways
QuickGOQ9Y3X0
Ontology : AmiGORNA binding  protein binding  
Ontology : EGO-EBIRNA binding  protein binding  
NDEx NetworkCCDC9
Atlas of Cancer Signalling NetworkCCDC9
Wikipedia pathwaysCCDC9
Orthology - Evolution
OrthoDB26093
GeneTree (enSembl)ENSG00000105321
Phylogenetic Trees/Animal Genes : TreeFamCCDC9
HOVERGENQ9Y3X0
HOGENOMQ9Y3X0
Homologs : HomoloGeneCCDC9
Homology/Alignments : Family Browser (UCSC)CCDC9
Gene fusions - Rearrangements
Fusion : MitelmanCCDC9/DHX34 [19q13.32/19q13.32]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC9
dbVarCCDC9
ClinVarCCDC9
1000_GenomesCCDC9 
Exome Variant ServerCCDC9
ExAC (Exome Aggregation Consortium)CCDC9 (select the gene name)
Genetic variants : HAPMAP26093
Genomic Variants (DGV)CCDC9 [DGVbeta]
DECIPHERCCDC9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC9 
Mutations
ICGC Data PortalCCDC9 
TCGA Data PortalCCDC9 
Broad Tumor PortalCCDC9
OASIS PortalCCDC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC9
DgiDB (Drug Gene Interaction Database)CCDC9
DoCM (Curated mutations)CCDC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC9 (select a term)
intoGenCCDC9
Cancer3DCCDC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC9
Genetic Testing Registry CCDC9
NextProtQ9Y3X0 [Medical]
TSGene26093
GENETestsCCDC9
Huge Navigator CCDC9 [HugePedia]
snp3D : Map Gene to Disease26093
BioCentury BCIQCCDC9
ClinGenCCDC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26093
Chemical/Pharm GKB GenePA134946561
Clinical trialCCDC9
Miscellaneous
canSAR (ICR)CCDC9 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC9
EVEXCCDC9
GoPubMedCCDC9
iHOPCCDC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:09:13 CEST 2017

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