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CCDC90B (coiled-coil domain containing 90B)

Identity

Alias_symbol (synonym)MDS025
MDS011
Other alias
HGNC (Hugo) CCDC90B
LocusID (NCBI) 60492
Atlas_Id 61577
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 83259093 and ends at 83286407 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARRB1 (11q13.4) / CCDC90B (11q14.1)CCDC90B (11q14.1) / CCDC90B (11q14.1)CCDC90B (11q14.1) / CLPB (11q13.4)
CCDC90B (11q14.1) / TPRA1 (3q21.3)LIPA (10q23.31) / CCDC90B (11q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC90B   28108
Cards
Entrez_Gene (NCBI)CCDC90B  60492  coiled-coil domain containing 90B
AliasesMDS011; MDS025
GeneCards (Weizmann)CCDC90B
Ensembl hg19 (Hinxton)ENSG00000137500 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137500 [Gene_View]  chr11:83259093-83286407 [Contig_View]  CCDC90B [Vega]
ICGC DataPortalENSG00000137500
TCGA cBioPortalCCDC90B
AceView (NCBI)CCDC90B
Genatlas (Paris)CCDC90B
WikiGenes60492
SOURCE (Princeton)CCDC90B
Genetics Home Reference (NIH)CCDC90B
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC90B  -     chr11:83259093-83286407 -  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC90B  -     11q14.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC90B - 11q14.1 [CytoView hg19]  CCDC90B - 11q14.1 [CytoView hg38]
Mapping of homologs : NCBICCDC90B [Mapview hg19]  CCDC90B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF182412 AF182424 AF271782 AK026338 AK055972
RefSeq transcript (Entrez)NM_001286116 NM_001286117 NM_001286118 NM_001286119 NM_001286120 NM_021825
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC90B
Cluster EST : UnigeneHs.368866 [ NCBI ]
CGAP (NCI)Hs.368866
Alternative Splicing GalleryENSG00000137500
Gene ExpressionCCDC90B [ NCBI-GEO ]   CCDC90B [ EBI - ARRAY_EXPRESS ]   CCDC90B [ SEEK ]   CCDC90B [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC90B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60492
GTEX Portal (Tissue expression)CCDC90B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZT6
Splice isoforms : SwissVarQ9GZT6
PhosPhoSitePlusQ9GZT6
Domains : Interpro (EBI)DUF1640   
Domain families : Pfam (Sanger)DUF1640 (PF07798)   
Domain families : Pfam (NCBI)pfam07798   
Conserved Domain (NCBI)CCDC90B
DMDM Disease mutations60492
Blocks (Seattle)CCDC90B
SuperfamilyQ9GZT6
Human Protein AtlasENSG00000137500
Peptide AtlasQ9GZT6
HPRD14378
IPIIPI00549236   IPI00854851   IPI00976523   IPI00977087   IPI00982483   IPI00981948   IPI00981201   IPI00983878   IPI00980601   IPI00979888   IPI00979817   IPI00979187   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZT6
IntAct (EBI)Q9GZT6
FunCoupENSG00000137500
BioGRIDCCDC90B
STRING (EMBL)CCDC90B
ZODIACCCDC90B
Ontologies - Pathways
QuickGOQ9GZT6
Ontology : AmiGOprotein binding  mitochondrion  mitochondrion  integral component of membrane  mitochondrial membrane  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrion  integral component of membrane  mitochondrial membrane  
NDEx NetworkCCDC90B
Atlas of Cancer Signalling NetworkCCDC90B
Wikipedia pathwaysCCDC90B
Orthology - Evolution
OrthoDB60492
GeneTree (enSembl)ENSG00000137500
Phylogenetic Trees/Animal Genes : TreeFamCCDC90B
HOVERGENQ9GZT6
HOGENOMQ9GZT6
Homologs : HomoloGeneCCDC90B
Homology/Alignments : Family Browser (UCSC)CCDC90B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC90B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC90B
dbVarCCDC90B
ClinVarCCDC90B
1000_GenomesCCDC90B 
Exome Variant ServerCCDC90B
ExAC (Exome Aggregation Consortium)CCDC90B (select the gene name)
Genetic variants : HAPMAP60492
Genomic Variants (DGV)CCDC90B [DGVbeta]
DECIPHERCCDC90B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC90B 
Mutations
ICGC Data PortalCCDC90B 
TCGA Data PortalCCDC90B 
Broad Tumor PortalCCDC90B
OASIS PortalCCDC90B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC90B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC90B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CCDC90B
DgiDB (Drug Gene Interaction Database)CCDC90B
DoCM (Curated mutations)CCDC90B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC90B (select a term)
intoGenCCDC90B
Cancer3DCCDC90B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC90B
Genetic Testing Registry CCDC90B
NextProtQ9GZT6 [Medical]
TSGene60492
GENETestsCCDC90B
Target ValidationCCDC90B
Huge Navigator CCDC90B [HugePedia]
snp3D : Map Gene to Disease60492
BioCentury BCIQCCDC90B
ClinGenCCDC90B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60492
Chemical/Pharm GKB GenePA162381967
Clinical trialCCDC90B
Miscellaneous
canSAR (ICR)CCDC90B (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC90B
EVEXCCDC90B
GoPubMedCCDC90B
iHOPCCDC90B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:16 CEST 2017

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