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CCDC90B (coiled-coil domain containing 90B)

Identity

Alias (NCBI)MDS011
MDS025
HGNC (Hugo) CCDC90B
HGNC Alias symbMDS025
MDS011
LocusID (NCBI) 60492
Atlas_Id 61577
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 83259093 and ends at 83286407 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARRB1 (11q13.4)::CCDC90B (11q14.1)CCDC90B (11q14.1)::CCDC90B (11q14.1)CCDC90B (11q14.1)::CLPB (11q13.4)
CCDC90B (11q14.1)::TPRA1 (3q21.3)LIPA (10q23.31)::CCDC90B (11q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CCDC90B   28108
Cards
Entrez_Gene (NCBI)CCDC90B    coiled-coil domain containing 90B
AliasesMDS011; MDS025
GeneCards (Weizmann)CCDC90B
Ensembl hg19 (Hinxton)ENSG00000137500 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137500 [Gene_View]  ENSG00000137500 [Sequence]  chr11:83259093-83286407 [Contig_View]  CCDC90B [Vega]
ICGC DataPortalENSG00000137500
TCGA cBioPortalCCDC90B
AceView (NCBI)CCDC90B
Genatlas (Paris)CCDC90B
SOURCE (Princeton)CCDC90B
Genetics Home Reference (NIH)CCDC90B
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC90B  -     chr11:83259093-83286407 -  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC90B  -     11q14.1   [Description]    (hg19-Feb_2009)
GoldenPathCCDC90B - 11q14.1 [CytoView hg19]  CCDC90B - 11q14.1 [CytoView hg38]
ImmunoBaseENSG00000137500
Genome Data Viewer NCBICCDC90B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF182412 AF182424 AF271782 AK026338 AK055972
RefSeq transcript (Entrez)NM_001286116 NM_001286117 NM_001286118 NM_001286119 NM_001286120 NM_021825
Consensus coding sequences : CCDS (NCBI)CCDC90B
Gene ExpressionCCDC90B [ NCBI-GEO ]   CCDC90B [ EBI - ARRAY_EXPRESS ]   CCDC90B [ SEEK ]   CCDC90B [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC90B [ Firebrowse - Broad ]
GenevisibleExpression of CCDC90B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60492
GTEX Portal (Tissue expression)CCDC90B
Human Protein AtlasENSG00000137500-CCDC90B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZT6
PhosPhoSitePlusQ9GZT6
Domains : Interpro (EBI)DUF1640   
Domain families : Pfam (Sanger)DUF1640 (PF07798)   
Domain families : Pfam (NCBI)pfam07798   
Conserved Domain (NCBI)CCDC90B
PDB (RSDB)6H9M   
PDB Europe6H9M   
PDB (PDBSum)6H9M   
PDB (IMB)6H9M   
Structural Biology KnowledgeBase6H9M   
SCOP (Structural Classification of Proteins)6H9M   
CATH (Classification of proteins structures)6H9M   
SuperfamilyQ9GZT6
AlphaFold pdb e-kbQ9GZT6   
Human Protein Atlas [tissue]ENSG00000137500-CCDC90B [tissue]
HPRD14378
Protein Interaction databases
DIP (DOE-UCLA)Q9GZT6
IntAct (EBI)Q9GZT6
BioGRIDCCDC90B
STRING (EMBL)CCDC90B
ZODIACCCDC90B
Ontologies - Pathways
QuickGOQ9GZT6
Ontology : AmiGOprotein binding  mitochondrion  mitochondrion  integral component of membrane  mitochondrial membrane  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrion  integral component of membrane  mitochondrial membrane  
NDEx NetworkCCDC90B
Atlas of Cancer Signalling NetworkCCDC90B
Wikipedia pathwaysCCDC90B
Orthology - Evolution
OrthoDB60492
GeneTree (enSembl)ENSG00000137500
Phylogenetic Trees/Animal Genes : TreeFamCCDC90B
Homologs : HomoloGeneCCDC90B
Homology/Alignments : Family Browser (UCSC)CCDC90B
Gene fusions - Rearrangements
Fusion : QuiverCCDC90B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC90B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC90B
dbVarCCDC90B
ClinVarCCDC90B
MonarchCCDC90B
1000_GenomesCCDC90B 
Exome Variant ServerCCDC90B
GNOMAD BrowserENSG00000137500
Varsome BrowserCCDC90B
ACMGCCDC90B variants
VarityQ9GZT6
Genomic Variants (DGV)CCDC90B [DGVbeta]
DECIPHERCCDC90B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC90B 
Mutations
ICGC Data PortalCCDC90B 
TCGA Data PortalCCDC90B 
Broad Tumor PortalCCDC90B
OASIS PortalCCDC90B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC90B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCDC90B
Mutations and Diseases : HGMDCCDC90B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCDC90B
DgiDB (Drug Gene Interaction Database)CCDC90B
DoCM (Curated mutations)CCDC90B
CIViC (Clinical Interpretations of Variants in Cancer)CCDC90B
Cancer3DCCDC90B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC90B
MedgenCCDC90B
Genetic Testing Registry CCDC90B
NextProtQ9GZT6 [Medical]
GENETestsCCDC90B
Target ValidationCCDC90B
Huge Navigator CCDC90B [HugePedia]
ClinGenCCDC90B
Clinical trials, drugs, therapy
MyCancerGenomeCCDC90B
Protein Interactions : CTDCCDC90B
Pharm GKB GenePA162381967
PharosQ9GZT6
Clinical trialCCDC90B
Miscellaneous
canSAR (ICR)CCDC90B
HarmonizomeCCDC90B
ARCHS4CCDC90B
DataMed IndexCCDC90B
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCDC90B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:48:01 CET 2022

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