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CCDC91 (coiled-coil domain containing 91)

Identity

Alias_symbol (synonym)p56
FLJ11088
DKFZp779L1558
Other aliasHSD8
HGNC (Hugo) CCDC91
LocusID (NCBI) 55297
Atlas_Id 61578
Location 12p11.22  [Link to chromosome band 12p11]
Location_base_pair Starts at 28190427 and ends at 28550166 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APP (21q21.3) / CCDC91 (12p11.22)BICD1 (12p11.21) / CCDC91 (12p11.22)CCDC91 (12p11.22) / CRTC3 (15q26.1)
CCDC91 (12p11.22) / FAR2 (12p11.22)CCDC91 (12p11.22) / FRY (13q13.1)CCDC91 (12p11.22) / LYRM5 (12p12.1)
CCDC91 (12p11.22) / NTSR1 (20q13.33)CCDC91 (12p11.22) / PDZRN4 (12q12)HSP90AA1 (14q32.31) / CCDC91 (12p11.22)
ITPR2 (12p12.1) / CCDC91 (12p11.22)PCDH9 (13q21.32) / CCDC91 (12p11.22)CCDC91 LYRM5
CCDC91 FAR2CCDC91 NTSR1CCDC91 PDZRN4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC91   24855
Cards
Entrez_Gene (NCBI)CCDC91  55297  coiled-coil domain containing 91
AliasesHSD8; p56
GeneCards (Weizmann)CCDC91
Ensembl hg19 (Hinxton)ENSG00000123106 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123106 [Gene_View]  chr12:28190427-28550166 [Contig_View]  CCDC91 [Vega]
ICGC DataPortalENSG00000123106
TCGA cBioPortalCCDC91
AceView (NCBI)CCDC91
Genatlas (Paris)CCDC91
WikiGenes55297
SOURCE (Princeton)CCDC91
Genetics Home Reference (NIH)CCDC91
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC91  -     chr12:28190427-28550166 +  12p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC91  -     12p11.22   [Description]    (hg19-Feb_2009)
EnsemblCCDC91 - 12p11.22 [CytoView hg19]  CCDC91 - 12p11.22 [CytoView hg38]
Mapping of homologs : NCBICCDC91 [Mapview hg19]  CCDC91 [Mapview hg38]
OMIM617366   
Gene and transcription
Genbank (Entrez)AK001950 AK093152 AK309181 AL570537 AY251168
RefSeq transcript (Entrez)NM_001330367 NM_018318
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC91
Cluster EST : UnigeneHs.653125 [ NCBI ]
CGAP (NCI)Hs.653125
Alternative Splicing GalleryENSG00000123106
Gene ExpressionCCDC91 [ NCBI-GEO ]   CCDC91 [ EBI - ARRAY_EXPRESS ]   CCDC91 [ SEEK ]   CCDC91 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC91 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55297
GTEX Portal (Tissue expression)CCDC91
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6B0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6B0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6B0
Splice isoforms : SwissVarQ7Z6B0
PhosPhoSitePlusQ7Z6B0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC91
DMDM Disease mutations55297
Blocks (Seattle)CCDC91
PDB (SRS)1OM9   
PDB (PDBSum)1OM9   
PDB (IMB)1OM9   
PDB (RSDB)1OM9   
Structural Biology KnowledgeBase1OM9   
SCOP (Structural Classification of Proteins)1OM9   
CATH (Classification of proteins structures)1OM9   
SuperfamilyQ7Z6B0
Human Protein AtlasENSG00000123106
Peptide AtlasQ7Z6B0
HPRD16905
IPIIPI00333908   IPI00554633   IPI00470831   IPI01009720   IPI01015279   IPI01014446   IPI01014292   IPI01013483   IPI01013893   IPI01012455   IPI01013049   IPI01011599   IPI01012011   IPI01011667   IPI01009773   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6B0
IntAct (EBI)Q7Z6B0
FunCoupENSG00000123106
BioGRIDCCDC91
STRING (EMBL)CCDC91
ZODIACCCDC91
Ontologies - Pathways
QuickGOQ7Z6B0
Ontology : AmiGOnucleoplasm  Golgi apparatus  trans-Golgi network  protein transport  membrane  identical protein binding  Golgi to lysosome transport  
Ontology : EGO-EBInucleoplasm  Golgi apparatus  trans-Golgi network  protein transport  membrane  identical protein binding  Golgi to lysosome transport  
NDEx NetworkCCDC91
Atlas of Cancer Signalling NetworkCCDC91
Wikipedia pathwaysCCDC91
Orthology - Evolution
OrthoDB55297
GeneTree (enSembl)ENSG00000123106
Phylogenetic Trees/Animal Genes : TreeFamCCDC91
HOVERGENQ7Z6B0
HOGENOMQ7Z6B0
Homologs : HomoloGeneCCDC91
Homology/Alignments : Family Browser (UCSC)CCDC91
Gene fusions - Rearrangements
Fusion: TCGACCDC91 LYRM5
Fusion: TCGACCDC91 FAR2
Fusion: TCGACCDC91 NTSR1
Fusion: TCGACCDC91 PDZRN4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC91 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC91
dbVarCCDC91
ClinVarCCDC91
1000_GenomesCCDC91 
Exome Variant ServerCCDC91
ExAC (Exome Aggregation Consortium)CCDC91 (select the gene name)
Genetic variants : HAPMAP55297
Genomic Variants (DGV)CCDC91 [DGVbeta]
DECIPHERCCDC91 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC91 
Mutations
ICGC Data PortalCCDC91 
TCGA Data PortalCCDC91 
Broad Tumor PortalCCDC91
OASIS PortalCCDC91 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC91  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC91
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC91
DgiDB (Drug Gene Interaction Database)CCDC91
DoCM (Curated mutations)CCDC91 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC91 (select a term)
intoGenCCDC91
Cancer3DCCDC91(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617366   
Orphanet
MedgenCCDC91
Genetic Testing Registry CCDC91
NextProtQ7Z6B0 [Medical]
TSGene55297
GENETestsCCDC91
Target ValidationCCDC91
Huge Navigator CCDC91 [HugePedia]
snp3D : Map Gene to Disease55297
BioCentury BCIQCCDC91
ClinGenCCDC91
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55297
Chemical/Pharm GKB GenePA144596458
Clinical trialCCDC91
Miscellaneous
canSAR (ICR)CCDC91 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC91
EVEXCCDC91
GoPubMedCCDC91
iHOPCCDC91
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:04:17 CEST 2017

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