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CCDC92 (coiled-coil domain containing 92)

Identity

Alias_symbol (synonym)FLJ22471
Other alias-
HGNC (Hugo) CCDC92
LocusID (NCBI) 80212
Atlas_Id 61579
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 123936409 and ends at 123972985 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC92 (12q24.31) / BDKRB2 (14q32.2)CCDC92 (12q24.31) / CCDC92 (12q24.31)CES2 (16q22.1) / CCDC92 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC92   29563
Cards
Entrez_Gene (NCBI)CCDC92  80212  coiled-coil domain containing 92
Aliases
GeneCards (Weizmann)CCDC92
Ensembl hg19 (Hinxton)ENSG00000119242 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119242 [Gene_View]  chr12:123936409-123972985 [Contig_View]  CCDC92 [Vega]
ICGC DataPortalENSG00000119242
TCGA cBioPortalCCDC92
AceView (NCBI)CCDC92
Genatlas (Paris)CCDC92
WikiGenes80212
SOURCE (Princeton)CCDC92
Genetics Home Reference (NIH)CCDC92
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC92  -     chr12:123936409-123972985 -  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC92  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblCCDC92 - 12q24.31 [CytoView hg19]  CCDC92 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBICCDC92 [Mapview hg19]  CCDC92 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB015292 AK026124 AK054680 AK124358 AK125866
RefSeq transcript (Entrez)NM_001304957 NM_001304958 NM_001304959 NM_001304960 NM_001304961 NM_025140
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_187590
Consensus coding sequences : CCDS (NCBI)CCDC92
Cluster EST : UnigeneHs.713131 [ NCBI ]
CGAP (NCI)Hs.713131
Alternative Splicing GalleryENSG00000119242
Gene ExpressionCCDC92 [ NCBI-GEO ]   CCDC92 [ EBI - ARRAY_EXPRESS ]   CCDC92 [ SEEK ]   CCDC92 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC92 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80212
GTEX Portal (Tissue expression)CCDC92
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53HC0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53HC0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53HC0
Splice isoforms : SwissVarQ53HC0
PhosPhoSitePlusQ53HC0
Domains : Interpro (EBI)CCDC92   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC92
DMDM Disease mutations80212
Blocks (Seattle)CCDC92
SuperfamilyQ53HC0
Human Protein AtlasENSG00000119242
Peptide AtlasQ53HC0
HPRD16919
IPIIPI00604494   IPI00793911   IPI00794984   IPI01012960   IPI01011055   IPI01012054   
Protein Interaction databases
DIP (DOE-UCLA)Q53HC0
IntAct (EBI)Q53HC0
FunCoupENSG00000119242
BioGRIDCCDC92
STRING (EMBL)CCDC92
ZODIACCCDC92
Ontologies - Pathways
QuickGOQ53HC0
Ontology : AmiGOprotein binding  nucleoplasm  centrosome  centriole  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein binding  nucleoplasm  centrosome  centriole  intracellular membrane-bounded organelle  
NDEx NetworkCCDC92
Atlas of Cancer Signalling NetworkCCDC92
Wikipedia pathwaysCCDC92
Orthology - Evolution
OrthoDB80212
GeneTree (enSembl)ENSG00000119242
Phylogenetic Trees/Animal Genes : TreeFamCCDC92
HOVERGENQ53HC0
HOGENOMQ53HC0
Homologs : HomoloGeneCCDC92
Homology/Alignments : Family Browser (UCSC)CCDC92
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC92 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC92
dbVarCCDC92
ClinVarCCDC92
1000_GenomesCCDC92 
Exome Variant ServerCCDC92
ExAC (Exome Aggregation Consortium)CCDC92 (select the gene name)
Genetic variants : HAPMAP80212
Genomic Variants (DGV)CCDC92 [DGVbeta]
DECIPHERCCDC92 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC92 
Mutations
ICGC Data PortalCCDC92 
TCGA Data PortalCCDC92 
Broad Tumor PortalCCDC92
OASIS PortalCCDC92 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC92  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC92
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC92
DgiDB (Drug Gene Interaction Database)CCDC92
DoCM (Curated mutations)CCDC92 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC92 (select a term)
intoGenCCDC92
Cancer3DCCDC92(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC92
Genetic Testing Registry CCDC92
NextProtQ53HC0 [Medical]
TSGene80212
GENETestsCCDC92
Target ValidationCCDC92
Huge Navigator CCDC92 [HugePedia]
snp3D : Map Gene to Disease80212
BioCentury BCIQCCDC92
ClinGenCCDC92
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80212
Chemical/Pharm GKB GenePA144596459
Clinical trialCCDC92
Miscellaneous
canSAR (ICR)CCDC92 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC92
EVEXCCDC92
GoPubMedCCDC92
iHOPCCDC92
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:45 CEST 2017

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