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CCDC93 (coiled-coil domain containing 93)

Identity

Alias_symbol (synonym)FLJ10996
Other alias-
HGNC (Hugo) CCDC93
LocusID (NCBI) 54520
Atlas_Id 61580
Location 2q14.1  [Link to chromosome band 2q14]
Location_base_pair Starts at 118673054 and ends at 118771739 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC93 (2q14.1) / DAB2IP (9q33.2)CCDC93 (2q14.1) / IFT20 (17q11.2)CCDC93 (2q14.1) / MOB2 (11p15.5)
CCDC93 (2q14.1) / NUBPL (14q12)CCDC93 (2q14.1) / SEPT2 (2q37.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC93   25611
Cards
Entrez_Gene (NCBI)CCDC93  54520  coiled-coil domain containing 93
Aliases
GeneCards (Weizmann)CCDC93
Ensembl hg19 (Hinxton)ENSG00000125633 [Gene_View]  chr2:118673054-118771739 [Contig_View]  CCDC93 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125633 [Gene_View]  chr2:118673054-118771739 [Contig_View]  CCDC93 [Vega]
ICGC DataPortalENSG00000125633
TCGA cBioPortalCCDC93
AceView (NCBI)CCDC93
Genatlas (Paris)CCDC93
WikiGenes54520
SOURCE (Princeton)CCDC93
Genetics Home Reference (NIH)CCDC93
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC93  -     chr2:118673054-118771739 -  2q14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC93  -     2q14.1   [Description]    (hg38-Dec_2013)
EnsemblCCDC93 - 2q14.1 [CytoView hg19]  CCDC93 - 2q14.1 [CytoView hg38]
Mapping of homologs : NCBICCDC93 [Mapview hg19]  CCDC93 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209993 AF070582 AK001858 AK025611 AK057926
RefSeq transcript (Entrez)NM_019044
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929304
Consensus coding sequences : CCDS (NCBI)CCDC93
Cluster EST : UnigeneHs.107845 [ NCBI ]
CGAP (NCI)Hs.107845
Alternative Splicing GalleryENSG00000125633
Gene ExpressionCCDC93 [ NCBI-GEO ]   CCDC93 [ EBI - ARRAY_EXPRESS ]   CCDC93 [ SEEK ]   CCDC93 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC93 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54520
GTEX Portal (Tissue expression)CCDC93
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ567U6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ567U6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ567U6
Splice isoforms : SwissVarQ567U6
PhosPhoSitePlusQ567U6
Domains : Interpro (EBI)DUF2037   
Domain families : Pfam (Sanger)KOG2701 (PF09762)   
Domain families : Pfam (NCBI)pfam09762   
Conserved Domain (NCBI)CCDC93
DMDM Disease mutations54520
Blocks (Seattle)CCDC93
SuperfamilyQ567U6
Human Protein AtlasENSG00000125633
Peptide AtlasQ567U6
HPRD08557
IPIIPI00154668   IPI00796758   IPI00893617   
Protein Interaction databases
DIP (DOE-UCLA)Q567U6
IntAct (EBI)Q567U6
FunCoupENSG00000125633
BioGRIDCCDC93
STRING (EMBL)CCDC93
ZODIACCCDC93
Ontologies - Pathways
QuickGOQ567U6
Ontology : AmiGOprotein binding  early endosome  Golgi to plasma membrane transport  protein transport  
Ontology : EGO-EBIprotein binding  early endosome  Golgi to plasma membrane transport  protein transport  
NDEx NetworkCCDC93
Atlas of Cancer Signalling NetworkCCDC93
Wikipedia pathwaysCCDC93
Orthology - Evolution
OrthoDB54520
GeneTree (enSembl)ENSG00000125633
Phylogenetic Trees/Animal Genes : TreeFamCCDC93
HOVERGENQ567U6
HOGENOMQ567U6
Homologs : HomoloGeneCCDC93
Homology/Alignments : Family Browser (UCSC)CCDC93
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC93 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC93
dbVarCCDC93
ClinVarCCDC93
1000_GenomesCCDC93 
Exome Variant ServerCCDC93
ExAC (Exome Aggregation Consortium)CCDC93 (select the gene name)
Genetic variants : HAPMAP54520
Genomic Variants (DGV)CCDC93 [DGVbeta]
DECIPHER (Syndromes)2:118673054-118771739  ENSG00000125633
CONAN: Copy Number AnalysisCCDC93 
Mutations
ICGC Data PortalCCDC93 
TCGA Data PortalCCDC93 
Broad Tumor PortalCCDC93
OASIS PortalCCDC93 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC93  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC93
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC93
DgiDB (Drug Gene Interaction Database)CCDC93
DoCM (Curated mutations)CCDC93 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC93 (select a term)
intoGenCCDC93
Cancer3DCCDC93(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC93
Genetic Testing Registry CCDC93
NextProtQ567U6 [Medical]
TSGene54520
GENETestsCCDC93
Huge Navigator CCDC93 [HugePedia]
snp3D : Map Gene to Disease54520
BioCentury BCIQCCDC93
ClinGenCCDC93
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54520
Chemical/Pharm GKB GenePA144596460
Clinical trialCCDC93
Miscellaneous
canSAR (ICR)CCDC93 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC93
EVEXCCDC93
GoPubMedCCDC93
iHOPCCDC93
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:43 CET 2017

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