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CCDC94 (coiled-coil domain containing 94)

Identity

Alias_symbol (synonym)FLJ10374
Other alias-
HGNC (Hugo) CCDC94
LocusID (NCBI) 55702
Atlas_Id 54203
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4247070 and ends at 4269093 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC94 (19p13.3) / KMT2A (11q23.3)CHAF1A (19p13.3) / CCDC94 (19p13.3)KMT2A (11q23.3) / CCDC94 (19p13.3)
RFX2 (19p13.3) / CCDC94 (19p13.3)CHAF1A 19p13.3 / CCDC94 19p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC94   25518
Cards
Entrez_Gene (NCBI)CCDC94  55702  coiled-coil domain containing 94
Aliases
GeneCards (Weizmann)CCDC94
Ensembl hg19 (Hinxton)ENSG00000105248 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105248 [Gene_View]  chr19:4247070-4269093 [Contig_View]  CCDC94 [Vega]
ICGC DataPortalENSG00000105248
TCGA cBioPortalCCDC94
AceView (NCBI)CCDC94
Genatlas (Paris)CCDC94
WikiGenes55702
SOURCE (Princeton)CCDC94
Genetics Home Reference (NIH)CCDC94
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC94  -     chr19:4247070-4269093 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC94  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC94 - 19p13.3 [CytoView hg19]  CCDC94 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBICCDC94 [Mapview hg19]  CCDC94 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF091080 AK001236 AK023988 BC000561 BC019096
RefSeq transcript (Entrez)NM_018074
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC94
Cluster EST : UnigeneHs.21811 [ NCBI ]
CGAP (NCI)Hs.21811
Alternative Splicing GalleryENSG00000105248
Gene ExpressionCCDC94 [ NCBI-GEO ]   CCDC94 [ EBI - ARRAY_EXPRESS ]   CCDC94 [ SEEK ]   CCDC94 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC94 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55702
GTEX Portal (Tissue expression)CCDC94
Human Protein AtlasENSG00000105248-CCDC94 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BW85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BW85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BW85
Splice isoforms : SwissVarQ9BW85
PhosPhoSitePlusQ9BW85
Domains : Interpro (EBI)CWC16   
Domain families : Pfam (Sanger)DUF572 (PF04502)   
Domain families : Pfam (NCBI)pfam04502   
Conserved Domain (NCBI)CCDC94
DMDM Disease mutations55702
Blocks (Seattle)CCDC94
SuperfamilyQ9BW85
Human Protein Atlas [tissue]ENSG00000105248-CCDC94 [tissue]
Peptide AtlasQ9BW85
HPRD08546
IPIIPI00306471   
Protein Interaction databases
DIP (DOE-UCLA)Q9BW85
IntAct (EBI)Q9BW85
FunCoupENSG00000105248
BioGRIDCCDC94
STRING (EMBL)CCDC94
ZODIACCCDC94
Ontologies - Pathways
QuickGOQ9BW85
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC94
Atlas of Cancer Signalling NetworkCCDC94
Wikipedia pathwaysCCDC94
Orthology - Evolution
OrthoDB55702
GeneTree (enSembl)ENSG00000105248
Phylogenetic Trees/Animal Genes : TreeFamCCDC94
HOVERGENQ9BW85
HOGENOMQ9BW85
Homologs : HomoloGeneCCDC94
Homology/Alignments : Family Browser (UCSC)CCDC94
Gene fusions - Rearrangements
Fusion : MitelmanCHAF1A/CCDC94 [19p13.3/19p13.3]  [t(19;19)(p13;p13)]  
Fusion : MitelmanRFX2/CCDC94 [19p13.3/19p13.3]  [t(19;19)(p13;p13)]  
Fusion: TCGA_MDACCCHAF1A 19p13.3 CCDC94 19p13.3 BRCA
Tumor Fusion PortalCCDC94
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC94 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC94
dbVarCCDC94
ClinVarCCDC94
1000_GenomesCCDC94 
Exome Variant ServerCCDC94
ExAC (Exome Aggregation Consortium)ENSG00000105248
GNOMAD BrowserENSG00000105248
Genetic variants : HAPMAP55702
Genomic Variants (DGV)CCDC94 [DGVbeta]
DECIPHERCCDC94 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC94 
Mutations
ICGC Data PortalCCDC94 
TCGA Data PortalCCDC94 
Broad Tumor PortalCCDC94
OASIS PortalCCDC94 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC94  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC94
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC94
DgiDB (Drug Gene Interaction Database)CCDC94
DoCM (Curated mutations)CCDC94 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC94 (select a term)
intoGenCCDC94
Cancer3DCCDC94(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC94
MedgenCCDC94
Genetic Testing Registry CCDC94
NextProtQ9BW85 [Medical]
TSGene55702
GENETestsCCDC94
Target ValidationCCDC94
Huge Navigator CCDC94 [HugePedia]
snp3D : Map Gene to Disease55702
BioCentury BCIQCCDC94
ClinGenCCDC94
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55702
Chemical/Pharm GKB GenePA144596461
Clinical trialCCDC94
Miscellaneous
canSAR (ICR)CCDC94 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC94
EVEXCCDC94
GoPubMedCCDC94
iHOPCCDC94
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:06:20 CET 2017

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