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CCDC96 (coiled-coil domain containing 96)

Identity

Alias_symbol (synonym)FLJ90575
Other alias-
HGNC (Hugo) CCDC96
LocusID (NCBI) 257236
Atlas_Id 61581
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 7040850 and ends at 7043001 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC96   26900
Cards
Entrez_Gene (NCBI)CCDC96  257236  coiled-coil domain containing 96
Aliases
GeneCards (Weizmann)CCDC96
Ensembl hg19 (Hinxton)ENSG00000173013 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173013 [Gene_View]  chr4:7040850-7043001 [Contig_View]  CCDC96 [Vega]
ICGC DataPortalENSG00000173013
TCGA cBioPortalCCDC96
AceView (NCBI)CCDC96
Genatlas (Paris)CCDC96
WikiGenes257236
SOURCE (Princeton)CCDC96
Genetics Home Reference (NIH)CCDC96
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC96  -     chr4:7040850-7043001 -  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC96  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC96 - 4p16.1 [CytoView hg19]  CCDC96 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBICCDC96 [Mapview hg19]  CCDC96 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK075056 BC105055 BC112274 BQ009685 DB045256
RefSeq transcript (Entrez)NM_153376
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC96
Cluster EST : UnigeneHs.656757 [ NCBI ]
CGAP (NCI)Hs.656757
Alternative Splicing GalleryENSG00000173013
Gene ExpressionCCDC96 [ NCBI-GEO ]   CCDC96 [ EBI - ARRAY_EXPRESS ]   CCDC96 [ SEEK ]   CCDC96 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC96 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)257236
GTEX Portal (Tissue expression)CCDC96
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M329   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M329  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M329
Splice isoforms : SwissVarQ2M329
PhosPhoSitePlusQ2M329
Domains : Interpro (EBI)DUF4201   
Domain families : Pfam (Sanger)DUF4201 (PF13870)   
Domain families : Pfam (NCBI)pfam13870   
Conserved Domain (NCBI)CCDC96
DMDM Disease mutations257236
Blocks (Seattle)CCDC96
SuperfamilyQ2M329
Human Protein AtlasENSG00000173013
Peptide AtlasQ2M329
HPRD08297
IPIIPI00166414   
Protein Interaction databases
DIP (DOE-UCLA)Q2M329
IntAct (EBI)Q2M329
FunCoupENSG00000173013
BioGRIDCCDC96
STRING (EMBL)CCDC96
ZODIACCCDC96
Ontologies - Pathways
QuickGOQ2M329
Ontology : AmiGOcytoplasm  microtubule organizing center  
Ontology : EGO-EBIcytoplasm  microtubule organizing center  
NDEx NetworkCCDC96
Atlas of Cancer Signalling NetworkCCDC96
Wikipedia pathwaysCCDC96
Orthology - Evolution
OrthoDB257236
GeneTree (enSembl)ENSG00000173013
Phylogenetic Trees/Animal Genes : TreeFamCCDC96
HOVERGENQ2M329
HOGENOMQ2M329
Homologs : HomoloGeneCCDC96
Homology/Alignments : Family Browser (UCSC)CCDC96
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC96 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC96
dbVarCCDC96
ClinVarCCDC96
1000_GenomesCCDC96 
Exome Variant ServerCCDC96
ExAC (Exome Aggregation Consortium)CCDC96 (select the gene name)
Genetic variants : HAPMAP257236
Genomic Variants (DGV)CCDC96 [DGVbeta]
DECIPHERCCDC96 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC96 
Mutations
ICGC Data PortalCCDC96 
TCGA Data PortalCCDC96 
Broad Tumor PortalCCDC96
OASIS PortalCCDC96 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC96  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC96
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CCDC96
DgiDB (Drug Gene Interaction Database)CCDC96
DoCM (Curated mutations)CCDC96 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC96 (select a term)
intoGenCCDC96
Cancer3DCCDC96(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC96
Genetic Testing Registry CCDC96
NextProtQ2M329 [Medical]
TSGene257236
GENETestsCCDC96
Target ValidationCCDC96
Huge Navigator CCDC96 [HugePedia]
snp3D : Map Gene to Disease257236
BioCentury BCIQCCDC96
ClinGenCCDC96
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257236
Chemical/Pharm GKB GenePA144596463
Clinical trialCCDC96
Miscellaneous
canSAR (ICR)CCDC96 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC96
EVEXCCDC96
GoPubMedCCDC96
iHOPCCDC96
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:04:17 CEST 2017

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