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CCDC97 (coiled-coil domain containing 97)

Identity

Alias_symbol (synonym)FLJ40267
MGC20255
Other alias-
HGNC (Hugo) CCDC97
LocusID (NCBI) 90324
Atlas_Id 61582
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 41310480 and ends at 41324883 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC97 (19q13.2) / ACAN (15q26.1)CCDC97 (19q13.2) / GTF2A2 (15q22.2)CCDC97 (19q13.2) / PRKCE (2p21)
CCDC97 (19q13.2) / SIPA1L3 (19q13.13)NUCKS1 (1q32.1) / CCDC97 (19q13.2)TGFB1 (19q13.2) / CCDC97 (19q13.2)
CCDC97 GTF2A2CCDC97 SIPA1L3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC97   28289
Cards
Entrez_Gene (NCBI)CCDC97  90324  coiled-coil domain containing 97
Aliases
GeneCards (Weizmann)CCDC97
Ensembl hg19 (Hinxton)ENSG00000142039 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142039 [Gene_View]  chr19:41310480-41324883 [Contig_View]  CCDC97 [Vega]
ICGC DataPortalENSG00000142039
TCGA cBioPortalCCDC97
AceView (NCBI)CCDC97
Genatlas (Paris)CCDC97
WikiGenes90324
SOURCE (Princeton)CCDC97
Genetics Home Reference (NIH)CCDC97
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC97  -     chr19:41310480-41324883 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC97  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC97 - 19q13.2 [CytoView hg19]  CCDC97 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBICCDC97 [Mapview hg19]  CCDC97 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097586 AL833726 BC007575 BC011577 BC019597
RefSeq transcript (Entrez)NM_001346100 NM_052848
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC97
Cluster EST : UnigeneHs.437497 [ NCBI ]
CGAP (NCI)Hs.437497
Alternative Splicing GalleryENSG00000142039
Gene ExpressionCCDC97 [ NCBI-GEO ]   CCDC97 [ EBI - ARRAY_EXPRESS ]   CCDC97 [ SEEK ]   CCDC97 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC97 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90324
GTEX Portal (Tissue expression)CCDC97
Human Protein AtlasENSG00000142039-CCDC97 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96F63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96F63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96F63
Splice isoforms : SwissVarQ96F63
PhosPhoSitePlusQ96F63
Domains : Interpro (EBI)DUF2052_coiled-coil   
Domain families : Pfam (Sanger)DUF2052 (PF09747)   
Domain families : Pfam (NCBI)pfam09747   
Conserved Domain (NCBI)CCDC97
DMDM Disease mutations90324
Blocks (Seattle)CCDC97
SuperfamilyQ96F63
Human Protein Atlas [tissue]ENSG00000142039-CCDC97 [tissue]
Peptide AtlasQ96F63
HPRD14467
IPIIPI00061777   
Protein Interaction databases
DIP (DOE-UCLA)Q96F63
IntAct (EBI)Q96F63
FunCoupENSG00000142039
BioGRIDCCDC97
STRING (EMBL)CCDC97
ZODIACCCDC97
Ontologies - Pathways
QuickGOQ96F63
Ontology : AmiGOU2 snRNP  
Ontology : EGO-EBIU2 snRNP  
NDEx NetworkCCDC97
Atlas of Cancer Signalling NetworkCCDC97
Wikipedia pathwaysCCDC97
Orthology - Evolution
OrthoDB90324
GeneTree (enSembl)ENSG00000142039
Phylogenetic Trees/Animal Genes : TreeFamCCDC97
HOVERGENQ96F63
HOGENOMQ96F63
Homologs : HomoloGeneCCDC97
Homology/Alignments : Family Browser (UCSC)CCDC97
Gene fusions - Rearrangements
Fusion: TCGA_MDACCCCDC97 GTF2A2
Fusion: TCGA_MDACCCCDC97 SIPA1L3
Tumor Fusion PortalCCDC97
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC97 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC97
dbVarCCDC97
ClinVarCCDC97
1000_GenomesCCDC97 
Exome Variant ServerCCDC97
ExAC (Exome Aggregation Consortium)ENSG00000142039
GNOMAD BrowserENSG00000142039
Genetic variants : HAPMAP90324
Genomic Variants (DGV)CCDC97 [DGVbeta]
DECIPHERCCDC97 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC97 
Mutations
ICGC Data PortalCCDC97 
TCGA Data PortalCCDC97 
Broad Tumor PortalCCDC97
OASIS PortalCCDC97 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC97  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC97
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC97
DgiDB (Drug Gene Interaction Database)CCDC97
DoCM (Curated mutations)CCDC97 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC97 (select a term)
intoGenCCDC97
Cancer3DCCDC97(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC97
MedgenCCDC97
Genetic Testing Registry CCDC97
NextProtQ96F63 [Medical]
TSGene90324
GENETestsCCDC97
Target ValidationCCDC97
Huge Navigator CCDC97 [HugePedia]
snp3D : Map Gene to Disease90324
BioCentury BCIQCCDC97
ClinGenCCDC97
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90324
Chemical/Pharm GKB GenePA144596464
Clinical trialCCDC97
Miscellaneous
canSAR (ICR)CCDC97 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC97
EVEXCCDC97
GoPubMedCCDC97
iHOPCCDC97
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:38:19 CET 2017

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