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CCDC9B (coiled-coil domain containing 9B)

Identity

Alias (NCBI)C15orf52
HGNC (Hugo) CCDC9B
LocusID (NCBI) 388115
Atlas_Id 80487
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 40331452 and ends at 40340967 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)CCDC9B   33488
Cards
Entrez_Gene (NCBI)CCDC9B    coiled-coil domain containing 9B
AliasesC15orf52
GeneCards (Weizmann)CCDC9B
Ensembl hg19 (Hinxton)ENSG00000188549 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188549 [Gene_View]  ENSG00000188549 [Sequence]  chr15:40331452-40340967 [Contig_View]  CCDC9B [Vega]
ICGC DataPortalENSG00000188549
TCGA cBioPortalCCDC9B
AceView (NCBI)CCDC9B
Genatlas (Paris)CCDC9B
SOURCE (Princeton)CCDC9B
Genetics Home Reference (NIH)CCDC9B
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC9B  -     chr15:40331452-40340967 -  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC9B  -     15q15.1   [Description]    (hg19-Feb_2009)
GoldenPathCCDC9B - 15q15.1 [CytoView hg19]  CCDC9B - 15q15.1 [CytoView hg38]
ImmunoBaseENSG00000188549
Genome Data Viewer NCBICCDC9B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK124643 AK125329 AK126035 AK126485 BC015670
RefSeq transcript (Entrez)NM_207380
Consensus coding sequences : CCDS (NCBI)CCDC9B
Gene ExpressionCCDC9B [ NCBI-GEO ]   CCDC9B [ EBI - ARRAY_EXPRESS ]   CCDC9B [ SEEK ]   CCDC9B [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC9B [ Firebrowse - Broad ]
GenevisibleExpression of CCDC9B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388115
GTEX Portal (Tissue expression)CCDC9B
Human Protein AtlasENSG00000188549-CCDC9B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUT6
PhosPhoSitePlusQ6ZUT6
Domains : Interpro (EBI)DUF4594   
Domain families : Pfam (Sanger)DUF4594 (PF15266)   
Domain families : Pfam (NCBI)pfam15266   
Conserved Domain (NCBI)CCDC9B
SuperfamilyQ6ZUT6
AlphaFold pdb e-kbQ6ZUT6   
Human Protein Atlas [tissue]ENSG00000188549-CCDC9B [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUT6
IntAct (EBI)Q6ZUT6
BioGRIDCCDC9B
STRING (EMBL)CCDC9B
ZODIACCCDC9B
Ontologies - Pathways
QuickGOQ6ZUT6
Ontology : AmiGORNA binding  
Ontology : EGO-EBIRNA binding  
NDEx NetworkCCDC9B
Atlas of Cancer Signalling NetworkCCDC9B
Wikipedia pathwaysCCDC9B
Orthology - Evolution
OrthoDB388115
GeneTree (enSembl)ENSG00000188549
Phylogenetic Trees/Animal Genes : TreeFamCCDC9B
Homologs : HomoloGeneCCDC9B
Homology/Alignments : Family Browser (UCSC)CCDC9B
Gene fusions - Rearrangements
Fusion : QuiverCCDC9B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC9B
dbVarCCDC9B
ClinVarCCDC9B
MonarchCCDC9B
1000_GenomesCCDC9B 
Exome Variant ServerCCDC9B
GNOMAD BrowserENSG00000188549
Varsome BrowserCCDC9B
ACMGCCDC9B variants
VarityQ6ZUT6
Genomic Variants (DGV)CCDC9B [DGVbeta]
DECIPHERCCDC9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC9B 
Mutations
ICGC Data PortalCCDC9B 
TCGA Data PortalCCDC9B 
Broad Tumor PortalCCDC9B
OASIS PortalCCDC9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC9B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCDC9B
Mutations and Diseases : HGMDCCDC9B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCDC9B
DgiDB (Drug Gene Interaction Database)CCDC9B
DoCM (Curated mutations)CCDC9B
CIViC (Clinical Interpretations of Variants in Cancer)CCDC9B
Cancer3DCCDC9B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC9B
MedgenCCDC9B
Genetic Testing Registry CCDC9B
NextProtQ6ZUT6 [Medical]
GENETestsCCDC9B
Target ValidationCCDC9B
Huge Navigator CCDC9B [HugePedia]
ClinGenCCDC9B
Clinical trials, drugs, therapy
MyCancerGenomeCCDC9B
Protein Interactions : CTDCCDC9B
Pharm GKB GenePA162378161
PharosQ6ZUT6
Clinical trialCCDC9B
Miscellaneous
canSAR (ICR)CCDC9B
HarmonizomeCCDC9B
DataMed IndexCCDC9B
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCDC9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:45:23 CEST 2021

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