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CCER1 (coiled-coil glutamate rich protein 1)

Identity

Alias_namesC12orf12
chromosome 12 open reading frame 12
coiled-coil glutamate-rich protein 1
Alias_symbol (synonym)MGC26598
Other alias
HGNC (Hugo) CCER1
LocusID (NCBI) 196477
Atlas_Id 61583
Location 12q21.33  [Link to chromosome band 12q21]
Location_base_pair Starts at 90952215 and ends at 90955176 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCER1   28373
Cards
Entrez_Gene (NCBI)CCER1  196477  coiled-coil glutamate rich protein 1
AliasesC12orf12
GeneCards (Weizmann)CCER1
Ensembl hg19 (Hinxton)ENSG00000197651 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197651 [Gene_View]  chr12:90952215-90955176 [Contig_View]  CCER1 [Vega]
ICGC DataPortalENSG00000197651
TCGA cBioPortalCCER1
AceView (NCBI)CCER1
Genatlas (Paris)CCER1
WikiGenes196477
SOURCE (Princeton)CCER1
Genetics Home Reference (NIH)CCER1
Genomic and cartography
GoldenPath hg38 (UCSC)CCER1  -     chr12:90952215-90955176 -  12q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCER1  -     12q21.33   [Description]    (hg19-Feb_2009)
EnsemblCCER1 - 12q21.33 [CytoView hg19]  CCER1 - 12q21.33 [CytoView hg38]
Mapping of homologs : NCBICCER1 [Mapview hg19]  CCER1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC024183 BC026075 BC027600 BC034491 BX114695
RefSeq transcript (Entrez)NM_152638
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCER1
Cluster EST : UnigeneHs.128574 [ NCBI ]
CGAP (NCI)Hs.128574
Alternative Splicing GalleryENSG00000197651
Gene ExpressionCCER1 [ NCBI-GEO ]   CCER1 [ EBI - ARRAY_EXPRESS ]   CCER1 [ SEEK ]   CCER1 [ MEM ]
Gene Expression Viewer (FireBrowse)CCER1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196477
GTEX Portal (Tissue expression)CCER1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC90   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TC90  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TC90
Splice isoforms : SwissVarQ8TC90
PhosPhoSitePlusQ8TC90
Domains : Interpro (EBI)CCER1   
Domain families : Pfam (Sanger)CCER1 (PF15482)   
Domain families : Pfam (NCBI)pfam15482   
Conserved Domain (NCBI)CCER1
DMDM Disease mutations196477
Blocks (Seattle)CCER1
SuperfamilyQ8TC90
Human Protein AtlasENSG00000197651
Peptide AtlasQ8TC90
HPRD14505
IPIIPI00290892   IPI01022320   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC90
IntAct (EBI)Q8TC90
FunCoupENSG00000197651
BioGRIDCCER1
STRING (EMBL)CCER1
ZODIACCCER1
Ontologies - Pathways
QuickGOQ8TC90
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCER1
Atlas of Cancer Signalling NetworkCCER1
Wikipedia pathwaysCCER1
Orthology - Evolution
OrthoDB196477
GeneTree (enSembl)ENSG00000197651
Phylogenetic Trees/Animal Genes : TreeFamCCER1
HOVERGENQ8TC90
HOGENOMQ8TC90
Homologs : HomoloGeneCCER1
Homology/Alignments : Family Browser (UCSC)CCER1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCER1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCER1
dbVarCCER1
ClinVarCCER1
1000_GenomesCCER1 
Exome Variant ServerCCER1
ExAC (Exome Aggregation Consortium)CCER1 (select the gene name)
Genetic variants : HAPMAP196477
Genomic Variants (DGV)CCER1 [DGVbeta]
DECIPHERCCER1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCER1 
Mutations
ICGC Data PortalCCER1 
TCGA Data PortalCCER1 
Broad Tumor PortalCCER1
OASIS PortalCCER1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCER1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCER1
DgiDB (Drug Gene Interaction Database)CCER1
DoCM (Curated mutations)CCER1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCER1 (select a term)
intoGenCCER1
Cancer3DCCER1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCER1
Genetic Testing Registry CCER1
NextProtQ8TC90 [Medical]
TSGene196477
GENETestsCCER1
Target ValidationCCER1
Huge Navigator CCER1 [HugePedia]
snp3D : Map Gene to Disease196477
BioCentury BCIQCCER1
ClinGenCCER1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196477
Chemical/Pharm GKB GenePA142672294
Clinical trialCCER1
Miscellaneous
canSAR (ICR)CCER1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCER1
EVEXCCER1
GoPubMedCCER1
iHOPCCER1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:17 CEST 2017

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