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CCER2 (coiled-coil glutamate rich protein 2)

Identity

Alias_namescoiled-coil glutamate-rich protein 2
Other alias-
HGNC (Hugo) CCER2
LocusID (NCBI) 643669
Atlas_Id 61584
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 38908980 and ends at 38912158 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCER2   44662
Cards
Entrez_Gene (NCBI)CCER2  643669  coiled-coil glutamate rich protein 2
Aliases
GeneCards (Weizmann)CCER2
Ensembl hg19 (Hinxton)ENSG00000262484 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000262484 [Gene_View]  chr19:38908980-38912158 [Contig_View]  CCER2 [Vega]
ICGC DataPortalENSG00000262484
TCGA cBioPortalCCER2
AceView (NCBI)CCER2
Genatlas (Paris)CCER2
WikiGenes643669
SOURCE (Princeton)CCER2
Genetics Home Reference (NIH)CCER2
Genomic and cartography
GoldenPath hg38 (UCSC)CCER2  -     chr19:38908980-38912158 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCER2  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblCCER2 - 19q13.2 [CytoView hg19]  CCER2 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBICCER2 [Mapview hg19]  CCER2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM674447 BM717067 CB105023 EG328464 EG328465
RefSeq transcript (Entrez)NM_001243212
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCER2
Cluster EST : UnigeneHs.355357 [ NCBI ]
CGAP (NCI)Hs.355357
Alternative Splicing GalleryENSG00000262484
Gene ExpressionCCER2 [ NCBI-GEO ]   CCER2 [ EBI - ARRAY_EXPRESS ]   CCER2 [ SEEK ]   CCER2 [ MEM ]
Gene Expression Viewer (FireBrowse)CCER2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643669
GTEX Portal (Tissue expression)CCER2
Protein : pattern, domain, 3D structure
UniProt/SwissProtI3L3R5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtI3L3R5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProI3L3R5
Splice isoforms : SwissVarI3L3R5
PhosPhoSitePlusI3L3R5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCER2
DMDM Disease mutations643669
Blocks (Seattle)CCER2
SuperfamilyI3L3R5
Human Protein AtlasENSG00000262484
Peptide AtlasI3L3R5
Protein Interaction databases
DIP (DOE-UCLA)I3L3R5
IntAct (EBI)I3L3R5
FunCoupENSG00000262484
BioGRIDCCER2
STRING (EMBL)CCER2
ZODIACCCER2
Ontologies - Pathways
QuickGOI3L3R5
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkCCER2
Atlas of Cancer Signalling NetworkCCER2
Wikipedia pathwaysCCER2
Orthology - Evolution
OrthoDB643669
GeneTree (enSembl)ENSG00000262484
Phylogenetic Trees/Animal Genes : TreeFamCCER2
HOVERGENI3L3R5
HOGENOMI3L3R5
Homologs : HomoloGeneCCER2
Homology/Alignments : Family Browser (UCSC)CCER2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCER2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCER2
dbVarCCER2
ClinVarCCER2
1000_GenomesCCER2 
Exome Variant ServerCCER2
ExAC (Exome Aggregation Consortium)CCER2 (select the gene name)
Genetic variants : HAPMAP643669
Genomic Variants (DGV)CCER2 [DGVbeta]
DECIPHERCCER2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCER2 
Mutations
ICGC Data PortalCCER2 
TCGA Data PortalCCER2 
Broad Tumor PortalCCER2
OASIS PortalCCER2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCER2
BioMutasearch CCER2
DgiDB (Drug Gene Interaction Database)CCER2
DoCM (Curated mutations)CCER2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCER2 (select a term)
intoGenCCER2
Cancer3DCCER2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCER2
Genetic Testing Registry CCER2
NextProtI3L3R5 [Medical]
TSGene643669
GENETestsCCER2
Target ValidationCCER2
Huge Navigator CCER2 [HugePedia]
snp3D : Map Gene to Disease643669
BioCentury BCIQCCER2
ClinGenCCER2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643669
Chemical/Pharm GKB GenePA166123676
Clinical trialCCER2
Miscellaneous
canSAR (ICR)CCER2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCER2
EVEXCCER2
GoPubMedCCER2
iHOPCCER2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:42:46 CEST 2017

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