Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CCHCR1 (coiled-coil alpha-helical rod protein 1)

Identity

Alias_namesC6orf18
chromosome 6 open reading frame 18
Alias_symbol (synonym)HCR
Other aliasSBP
pg8
HGNC (Hugo) CCHCR1
LocusID (NCBI) 54535
Atlas_Id 51239
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31142439 and ends at 31158238 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCHCR1 (6p21.33) / CDA (1p36.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCHCR1   13930
Cards
Entrez_Gene (NCBI)CCHCR1  54535  coiled-coil alpha-helical rod protein 1
AliasesC6orf18; HCR; SBP; pg8
GeneCards (Weizmann)CCHCR1
Ensembl hg19 (Hinxton)ENSG00000204536 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204536 [Gene_View]  ENSG00000204536 [Sequence]  chr6:31142439-31158238 [Contig_View]  CCHCR1 [Vega]
ICGC DataPortalENSG00000204536
TCGA cBioPortalCCHCR1
AceView (NCBI)CCHCR1
Genatlas (Paris)CCHCR1
WikiGenes54535
SOURCE (Princeton)CCHCR1
Genetics Home Reference (NIH)CCHCR1
Genomic and cartography
GoldenPath hg38 (UCSC)CCHCR1  -     chr6:31142439-31158238 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCHCR1  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblCCHCR1 - 6p21.33 [CytoView hg19]  CCHCR1 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBICCHCR1 [Mapview hg19]  CCHCR1 [Mapview hg38]
OMIM605310   
Gene and transcription
Genbank (Entrez)AA356205 AB029331 AB112474 AB112475 AF216493
RefSeq transcript (Entrez)NM_001105563 NM_001105564 NM_019052
RefSeq genomic (Entrez)NC_000006 NG_054878 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248
Consensus coding sequences : CCDS (NCBI)CCHCR1
Cluster EST : UnigeneHs.485075 [ NCBI ]
CGAP (NCI)Hs.485075
Alternative Splicing GalleryENSG00000204536
Gene ExpressionCCHCR1 [ NCBI-GEO ]   CCHCR1 [ EBI - ARRAY_EXPRESS ]   CCHCR1 [ SEEK ]   CCHCR1 [ MEM ]
Gene Expression Viewer (FireBrowse)CCHCR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54535
GTEX Portal (Tissue expression)CCHCR1
Human Protein AtlasENSG00000204536-CCHCR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TD31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TD31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TD31
Splice isoforms : SwissVarQ8TD31
PhosPhoSitePlusQ8TD31
Domains : Interpro (EBI)HCR   
Domain families : Pfam (Sanger)HCR (PF07111)   
Domain families : Pfam (NCBI)pfam07111   
Conserved Domain (NCBI)CCHCR1
DMDM Disease mutations54535
Blocks (Seattle)CCHCR1
SuperfamilyQ8TD31
Human Protein Atlas [tissue]ENSG00000204536-CCHCR1 [tissue]
Peptide AtlasQ8TD31
HPRD05607
IPIIPI00182833   IPI00792279   IPI01021502   IPI00792776   IPI00789631   IPI00789062   IPI00791012   IPI00967226   IPI00790424   IPI00795983   IPI00797837   IPI00853456   IPI00943286   IPI00647201   IPI00643849   IPI00646513   IPI00853586   IPI00853542   IPI00853074   IPI00894480   IPI01009539   IPI00893422   IPI00894495   IPI00790438   IPI01014682   IPI01014814   IPI01015258   IPI00963966   IPI00965667   IPI01012787   IPI00964358   IPI00964915   IPI01014128   IPI00968061   IPI00964102   IPI00893921   IPI01012270   IPI00965936   IPI00964095   IPI00967538   
Protein Interaction databases
DIP (DOE-UCLA)Q8TD31
IntAct (EBI)Q8TD31
FunCoupENSG00000204536
BioGRIDCCHCR1
STRING (EMBL)CCHCR1
ZODIACCCHCR1
Ontologies - Pathways
QuickGOQ8TD31
Ontology : AmiGOnucleus  centriole  centriole  cytosol  protein export from nucleus  multicellular organism development  cell differentiation  
Ontology : EGO-EBInucleus  centriole  centriole  cytosol  protein export from nucleus  multicellular organism development  cell differentiation  
NDEx NetworkCCHCR1
Atlas of Cancer Signalling NetworkCCHCR1
Wikipedia pathwaysCCHCR1
Orthology - Evolution
OrthoDB54535
GeneTree (enSembl)ENSG00000204536
Phylogenetic Trees/Animal Genes : TreeFamCCHCR1
HOVERGENQ8TD31
HOGENOMQ8TD31
Homologs : HomoloGeneCCHCR1
Homology/Alignments : Family Browser (UCSC)CCHCR1
Gene fusions - Rearrangements
Fusion : QuiverCCHCR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCHCR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCHCR1
dbVarCCHCR1
ClinVarCCHCR1
1000_GenomesCCHCR1 
Exome Variant ServerCCHCR1
ExAC (Exome Aggregation Consortium)ENSG00000204536
GNOMAD BrowserENSG00000204536
Varsome BrowserCCHCR1
Genetic variants : HAPMAP54535
Genomic Variants (DGV)CCHCR1 [DGVbeta]
DECIPHERCCHCR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCHCR1 
Mutations
ICGC Data PortalCCHCR1 
TCGA Data PortalCCHCR1 
Broad Tumor PortalCCHCR1
OASIS PortalCCHCR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCHCR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCHCR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCHCR1
DgiDB (Drug Gene Interaction Database)CCHCR1
DoCM (Curated mutations)CCHCR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCHCR1 (select a term)
intoGenCCHCR1
Cancer3DCCHCR1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605310   
Orphanet
DisGeNETCCHCR1
MedgenCCHCR1
Genetic Testing Registry CCHCR1
NextProtQ8TD31 [Medical]
TSGene54535
GENETestsCCHCR1
Target ValidationCCHCR1
Huge Navigator CCHCR1 [HugePedia]
snp3D : Map Gene to Disease54535
BioCentury BCIQCCHCR1
ClinGenCCHCR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54535
Chemical/Pharm GKB GenePA134942738
Clinical trialCCHCR1
Miscellaneous
canSAR (ICR)CCHCR1 (select the gene name)
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCHCR1
EVEXCCHCR1
GoPubMedCCHCR1
iHOPCCHCR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:56:15 CET 2018

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