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CCIN (calicin)

Identity

Alias_symbol (synonym)KBTBD14
BTBD20
Other alias
HGNC (Hugo) CCIN
LocusID (NCBI) 881
Atlas_Id 61585
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 36169392 and ends at 36171334 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCIN (9p13.3) / TBRG1 (11q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCIN   1568
Cards
Entrez_Gene (NCBI)CCIN  881  calicin
AliasesBTBD20; KBTBD14
GeneCards (Weizmann)CCIN
Ensembl hg19 (Hinxton)ENSG00000185972 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185972 [Gene_View]  chr9:36169392-36171334 [Contig_View]  CCIN [Vega]
ICGC DataPortalENSG00000185972
TCGA cBioPortalCCIN
AceView (NCBI)CCIN
Genatlas (Paris)CCIN
WikiGenes881
SOURCE (Princeton)CCIN
Genetics Home Reference (NIH)CCIN
Genomic and cartography
GoldenPath hg38 (UCSC)CCIN  -     chr9:36169392-36171334 +  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCIN  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblCCIN - 9p13.3 [CytoView hg19]  CCIN - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBICCIN [Mapview hg19]  CCIN [Mapview hg38]
OMIM603960   
Gene and transcription
Genbank (Entrez)AA420997 AF333334 AK313763 BC019251 DQ890826
RefSeq transcript (Entrez)NM_005893
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCIN
Cluster EST : UnigeneHs.115460 [ NCBI ]
CGAP (NCI)Hs.115460
Alternative Splicing GalleryENSG00000185972
Gene ExpressionCCIN [ NCBI-GEO ]   CCIN [ EBI - ARRAY_EXPRESS ]   CCIN [ SEEK ]   CCIN [ MEM ]
Gene Expression Viewer (FireBrowse)CCIN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)881
GTEX Portal (Tissue expression)CCIN
Human Protein AtlasENSG00000185972-CCIN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13939   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13939  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13939
Splice isoforms : SwissVarQ13939
PhosPhoSitePlusQ13939
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB/POZ_dom    Gal_Oxidase_b-propeller    Kelch_1    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)    Kelch_1 (PF01344)   
Domain families : Pfam (NCBI)pfam07707    pfam00651    pfam01344   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  Kelch (SM00612)  
Conserved Domain (NCBI)CCIN
DMDM Disease mutations881
Blocks (Seattle)CCIN
SuperfamilyQ13939
Human Protein Atlas [tissue]ENSG00000185972-CCIN [tissue]
Peptide AtlasQ13939
HPRD04907
IPIIPI00299881   
Protein Interaction databases
DIP (DOE-UCLA)Q13939
IntAct (EBI)Q13939
FunCoupENSG00000185972
BioGRIDCCIN
STRING (EMBL)CCIN
ZODIACCCIN
Ontologies - Pathways
QuickGOQ13939
Ontology : AmiGOactin binding  ubiquitin-protein transferase activity  nucleus  multicellular organism development  spermatogenesis  actin cytoskeleton  cell differentiation  Cul3-RING ubiquitin ligase complex  cytoskeletal calyx  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIactin binding  ubiquitin-protein transferase activity  nucleus  multicellular organism development  spermatogenesis  actin cytoskeleton  cell differentiation  Cul3-RING ubiquitin ligase complex  cytoskeletal calyx  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  
NDEx NetworkCCIN
Atlas of Cancer Signalling NetworkCCIN
Wikipedia pathwaysCCIN
Orthology - Evolution
OrthoDB881
GeneTree (enSembl)ENSG00000185972
Phylogenetic Trees/Animal Genes : TreeFamCCIN
HOVERGENQ13939
HOGENOMQ13939
Homologs : HomoloGeneCCIN
Homology/Alignments : Family Browser (UCSC)CCIN
Gene fusions - Rearrangements
Tumor Fusion PortalCCIN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCIN
dbVarCCIN
ClinVarCCIN
1000_GenomesCCIN 
Exome Variant ServerCCIN
ExAC (Exome Aggregation Consortium)ENSG00000185972
GNOMAD BrowserENSG00000185972
Genetic variants : HAPMAP881
Genomic Variants (DGV)CCIN [DGVbeta]
DECIPHERCCIN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCIN 
Mutations
ICGC Data PortalCCIN 
TCGA Data PortalCCIN 
Broad Tumor PortalCCIN
OASIS PortalCCIN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCIN  [overview]  [genome browser]  [Tisrue]  [distribution]  
Mutations and Diseases : HGMDCCIN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCIN
DgiDB (Drug Gene Interaction Database)CCIN
DoCM (Curated mutations)CCIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCIN (select a term)
intoGenCCIN
Cancer3DCCIN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603960   
Orphanet
DisGeNETCCIN
MedgenCCIN
Genetic Testing Registry CCIN
NextProtQ13939 [Medical]
TSGene881
GENETestsCCIN
Target ValidationCCIN
Huge Navigator CCIN [HugePedia]
snp3D : Map Gene to Disease881
BioCentury BCIQCCIN
ClinGenCCIN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD881
Chemical/Pharm GKB GenePA26140
Clinical trialCCIN
Miscellaneous
canSAR (ICR)CCIN (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCIN
EVEXCCIN
GoPubMedCCIN
iHOPCCIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:19:32 CET 2017

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