Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CCK (cholecystokinin)

Identity

Other alias-
HGNC (Hugo) CCK
LocusID (NCBI) 885
Atlas_Id 45801
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42257824 and ends at 42266195 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCK (3p22.1) / EXOC6B (2p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCK   1569
Cards
Entrez_Gene (NCBI)CCK  885  cholecystokinin
Aliases
GeneCards (Weizmann)CCK
Ensembl hg19 (Hinxton)ENSG00000187094 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187094 [Gene_View]  chr3:42257824-42266195 [Contig_View]  CCK [Vega]
ICGC DataPortalENSG00000187094
TCGA cBioPortalCCK
AceView (NCBI)CCK
Genatlas (Paris)CCK
WikiGenes885
SOURCE (Princeton)CCK
Genetics Home Reference (NIH)CCK
Genomic and cartography
GoldenPath hg38 (UCSC)CCK  -     chr3:42257824-42266195 -  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCK  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblCCK - 3p22.1 [CytoView hg19]  CCK - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBICCK [Mapview hg19]  CCK [Mapview hg38]
OMIM118440   
Gene and transcription
Genbank (Entrez)AK289716 AK300784 BC008283 BC093055 BC111026
RefSeq transcript (Entrez)NM_000729 NM_001174138
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCK
Cluster EST : UnigeneHs.458426 [ NCBI ]
CGAP (NCI)Hs.458426
Alternative Splicing GalleryENSG00000187094
Gene ExpressionCCK [ NCBI-GEO ]   CCK [ EBI - ARRAY_EXPRESS ]   CCK [ SEEK ]   CCK [ MEM ]
Gene Expression Viewer (FireBrowse)CCK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)885
GTEX Portal (Tissue expression)CCK
Protein : pattern, domain, 3D structure
UniProt/SwissProtP06307   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP06307  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP06307
Splice isoforms : SwissVarP06307
PhosPhoSitePlusP06307
Domaine pattern : Prosite (Expaxy)GASTRIN (PS00259)   
Domains : Interpro (EBI)CCK-like    Gastrin    Gastrin/cholecystokinin_CS   
Domain families : Pfam (Sanger)Gastrin (PF00918)   
Domain families : Pfam (NCBI)pfam00918   
Conserved Domain (NCBI)CCK
DMDM Disease mutations885
Blocks (Seattle)CCK
SuperfamilyP06307
Human Protein AtlasENSG00000187094
Peptide AtlasP06307
HPRD00321
IPIIPI00026174   
Protein Interaction databases
DIP (DOE-UCLA)P06307
IntAct (EBI)P06307
FunCoupENSG00000187094
BioGRIDCCK
STRING (EMBL)CCK
ZODIACCCK
Ontologies - Pathways
QuickGOP06307
Ontology : AmiGObehavioral fear response  neuron migration  release of cytochrome c from mitochondria  hormone activity  neuropeptide hormone activity  extracellular region  extracellular space  activation of cysteine-type endopeptidase activity involved in apoptotic process  signal transduction  protein kinase C-activating G-protein coupled receptor signaling pathway  axonogenesis  positive regulation of cell proliferation  positive regulation of glutamate secretion  axon  dendrite  negative regulation of appetite  positive regulation of protein oligomerization  eating behavior  axon initial segment  terminal bouton  axon hillock  perikaryon  positive regulation of peptidyl-tyrosine phosphorylation  positive regulation of mitochondrial depolarization  regulation of sensory perception of pain  
Ontology : EGO-EBIbehavioral fear response  neuron migration  release of cytochrome c from mitochondria  hormone activity  neuropeptide hormone activity  extracellular region  extracellular space  activation of cysteine-type endopeptidase activity involved in apoptotic process  signal transduction  protein kinase C-activating G-protein coupled receptor signaling pathway  axonogenesis  positive regulation of cell proliferation  positive regulation of glutamate secretion  axon  dendrite  negative regulation of appetite  positive regulation of protein oligomerization  eating behavior  axon initial segment  terminal bouton  axon hillock  perikaryon  positive regulation of peptidyl-tyrosine phosphorylation  positive regulation of mitochondrial depolarization  regulation of sensory perception of pain  
NDEx NetworkCCK
Atlas of Cancer Signalling NetworkCCK
Wikipedia pathwaysCCK
Orthology - Evolution
OrthoDB885
GeneTree (enSembl)ENSG00000187094
Phylogenetic Trees/Animal Genes : TreeFamCCK
HOVERGENP06307
HOGENOMP06307
Homologs : HomoloGeneCCK
Homology/Alignments : Family Browser (UCSC)CCK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCK
dbVarCCK
ClinVarCCK
1000_GenomesCCK 
Exome Variant ServerCCK
ExAC (Exome Aggregation Consortium)CCK (select the gene name)
Genetic variants : HAPMAP885
Genomic Variants (DGV)CCK [DGVbeta]
DECIPHERCCK [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCK 
Mutations
ICGC Data PortalCCK 
TCGA Data PortalCCK 
Broad Tumor PortalCCK
OASIS PortalCCK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCK  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCK
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCK
DgiDB (Drug Gene Interaction Database)CCK
DoCM (Curated mutations)CCK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCK (select a term)
intoGenCCK
Cancer3DCCK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM118440   
Orphanet
MedgenCCK
Genetic Testing Registry CCK
NextProtP06307 [Medical]
TSGene885
GENETestsCCK
Huge Navigator CCK [HugePedia]
snp3D : Map Gene to Disease885
BioCentury BCIQCCK
ClinGenCCK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD885
Chemical/Pharm GKB GenePA26141
Clinical trialCCK
Miscellaneous
canSAR (ICR)CCK (select the gene name)
Probes
Litterature
PubMed122 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCK
EVEXCCK
GoPubMedCCK
iHOPCCK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:09:14 CEST 2017

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