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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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CCL15 (chemokine (C-C motif) ligand 15)

Identity

Other namesHCC-2
HMRP-2B
LKN-1
LKN1
MIP-1 delta
MIP-1D
MIP-5
MRP-2B
NCC-3
NCC3
SCYA15
SCYL3
SY15
HGNC (Hugo) CCL15
LocusID (NCBI) 6359
Location 17q12
Location_base_pair Starts at 34324618 and ends at 34329084 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CCL15   10613
Cards
Entrez_Gene (NCBI)CCL15  6359  chemokine (C-C motif) ligand 15
GeneCards (Weizmann)CCL15
Ensembl hg19 (Hinxton)ENSG00000275718 [Gene_View]  chr17:34324618-34329084 [Contig_View]  CCL15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000275718 [Gene_View]  chr17:34324618-34329084 [Contig_View]  CCL15 [Vega]
ICGC DataPortalENSG00000275718
cBioPortalCCL15
AceView (NCBI)CCL15
Genatlas (Paris)CCL15
WikiGenes6359
SOURCE (Princeton)CCL15
Genomic and cartography
GoldenPath hg19 (UCSC)CCL15  -     chr17:34324618-34329084 -  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCL15  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblCCL15 - 17q12 [CytoView hg19]  CCL15 - 17q12 [CytoView hg38]
Mapping of homologs : NCBICCL15 [Mapview hg19]  CCL15 [Mapview hg38]
OMIM601393   
Gene and transcription
Genbank (Entrez)AF031587 AI244164 BX098368 BX497188 U58914
RefSeq transcript (Entrez)NM_004167 NM_032964 NM_032965
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NT_187614 NW_004929407
Consensus coding sequences : CCDS (NCBI)CCL15
Cluster EST : UnigeneHs.272493 [ NCBI ]
CGAP (NCI)Hs.272493
Alternative Splicing : Fast-db (Paris)GSHG0013288
Alternative Splicing GalleryENSG00000275718
Gene ExpressionCCL15 [ NCBI-GEO ]     CCL15 [ SEEK ]   CCL15 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16663 (Uniprot)
NextProtQ16663  [Medical]
With graphics : InterProQ16663
Splice isoforms : SwissVarQ16663 (Swissvar)
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CC (PS00472)   
Domains : Interpro (EBI)Chemokine_CC_CS    Chemokine_IL8-like_dom   
Related proteins : CluSTrQ16663
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
DMDM Disease mutations6359
Blocks (Seattle)Q16663
PDB (SRS)2HCC   
PDB (PDBSum)2HCC   
PDB (IMB)2HCC   
PDB (RSDB)2HCC   
Human Protein AtlasENSG00000275718
Peptide AtlasQ16663
HPRD03232
IPIIPI00003440   IPI00791995   
Protein Interaction databases
DIP (DOE-UCLA)Q16663
IntAct (EBI)Q16663
FunCoupENSG00000275718
BioGRIDCCL15
IntegromeDBCCL15
STRING (EMBL)CCL15
Ontologies - Pathways
QuickGOQ16663
Ontology : AmiGOreceptor binding  extracellular space  cellular calcium ion homeostasis  chemotaxis  immune response  signal transduction  cell-cell signaling  chemokine activity  heparin binding  chemoattractant activity  positive chemotaxis  cell chemotaxis  cell chemotaxis  
Ontology : EGO-EBIreceptor binding  extracellular space  cellular calcium ion homeostasis  chemotaxis  immune response  signal transduction  cell-cell signaling  chemokine activity  heparin binding  chemoattractant activity  positive chemotaxis  cell chemotaxis  cell chemotaxis  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway   
Protein Interaction DatabaseCCL15
DoCM (Curated mutations)CCL15
Wikipedia pathwaysCCL15
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCCL15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCL15
dbVarCCL15
ClinVarCCL15
1000_GenomesCCL15 
Exome Variant ServerCCL15
SNP (GeneSNP Utah)CCL15
SNP : HGBaseCCL15
Genetic variants : HAPMAPCCL15
Genomic Variants (DGV)CCL15 [DGVbeta]
Mutations
ICGC Data PortalENSG00000275718 
Somatic Mutations in Cancer : COSMICCCL15 
CONAN: Copy Number AnalysisCCL15 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:34324618-34329084
Mutations and Diseases : HGMDCCL15
OMIM601393   
MedgenCCL15
NextProtQ16663 [Medical]
GENETestsCCL15
Disease Genetic AssociationCCL15
Huge Navigator CCL15 [HugePedia]  CCL15 [HugeCancerGEM]
snp3D : Map Gene to Disease6359
DGIdb (Drug Gene Interaction db)CCL15
General knowledge
Homologs : HomoloGeneCCL15
Homology/Alignments : Family Browser (UCSC)CCL15
Phylogenetic Trees/Animal Genes : TreeFamCCL15
Chemical/Protein Interactions : CTD6359
Chemical/Pharm GKB GenePA35546
Clinical trialCCL15
Cancer Resource (Charite)ENSG00000275718
Other databases
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
CoreMineCCL15
GoPubMedCCL15
iHOPCCL15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 14:58:33 CET 2015

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jlhuret@AtlasGeneticsOncology.org.