Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCL15 (chemokine (C-C motif) ligand 15)

Identity

Other namesHCC-2
HMRP-2B
LKN-1
LKN1
MIP-1 delta
MIP-1D
MIP-5
MRP-2B
NCC-3
NCC3
SCYA15
SCYL3
SY15
HGNC (Hugo) CCL15
LocusID (NCBI) 6359
Location 17q12
Location_base_pair Starts at 34324618 and ends at 34329084 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CCL15   10613
Cards
Entrez_Gene (NCBI)CCL15  6359  chemokine (C-C motif) ligand 15
GeneCards (Weizmann)CCL15
Ensembl (Hinxton)ENSG00000267596 [Gene_View]  chr17:34324618-34329084 [Contig_View]  CCL15 [Vega]
ICGC DataPortalENSG00000267596
AceView (NCBI)CCL15
Genatlas (Paris)CCL15
WikiGenes6359
SOURCE (Princeton)NM_004167 NM_032964 NM_032965
Genomic and cartography
GoldenPath (UCSC)CCL15  -  17q12   chr17:34324618-34329084 -  17q12   [Description]    (hg19-Feb_2009)
EnsemblCCL15 - 17q12 [CytoView]
Mapping of homologs : NCBICCL15 [Mapview]
OMIM601393   
Gene and transcription
Genbank (Entrez)AF031587 AI244164 BX098368 BX497188 U58914
RefSeq transcript (Entrez)NM_004167 NM_032964 NM_032965
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010783 NT_187614 NW_001838432 NW_004929407
Consensus coding sequences : CCDS (NCBI)CCL15
Cluster EST : UnigeneHs.272493 [ NCBI ]
CGAP (NCI)Hs.272493
Alternative Splicing : Fast-db (Paris)GSHG0013288
Alternative Splicing GalleryENSG00000267596
Gene ExpressionCCL15 [ NCBI-GEO ]     CCL15 [ SEEK ]   CCL15 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16663 (Uniprot)
NextProtQ16663  [Medical]
With graphics : InterProQ16663
Splice isoforms : SwissVarQ16663 (Swissvar)
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CC (PS00472)   
Domains : Interpro (EBI)Chemokine_CC_CS    Chemokine_IL8-like_dom   
Related proteins : CluSTrQ16663
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
DMDM Disease mutations6359
Blocks (Seattle)Q16663
PDB (SRS)2HCC   
PDB (PDBSum)2HCC   
PDB (IMB)2HCC   
PDB (RSDB)2HCC   
Human Protein AtlasENSG00000267596
Peptide AtlasQ16663
HPRD03232
IPIIPI00003440   IPI00791995   
Protein Interaction databases
DIP (DOE-UCLA)Q16663
IntAct (EBI)Q16663
FunCoupENSG00000267596
BioGRIDCCL15
IntegromeDBCCL15
STRING (EMBL)CCL15
Ontologies - Pathways
QuickGOQ16663
Ontology : AmiGOreceptor binding  extracellular space  cellular calcium ion homeostasis  chemotaxis  immune response  signal transduction  cell-cell signaling  chemokine activity  heparin binding  chemoattractant activity  positive chemotaxis  cell chemotaxis  cell chemotaxis  
Ontology : EGO-EBIreceptor binding  extracellular space  cellular calcium ion homeostasis  chemotaxis  immune response  signal transduction  cell-cell signaling  chemokine activity  heparin binding  chemoattractant activity  positive chemotaxis  cell chemotaxis  cell chemotaxis  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway   
Protein Interaction DatabaseCCL15
Wikipedia pathwaysCCL15
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CCL15
SNP (GeneSNP Utah)CCL15
SNP : HGBaseCCL15
Genetic variants : HAPMAPCCL15
1000_GenomesCCL15 
ICGC programENSG00000267596 
CONAN: Copy Number AnalysisCCL15 
Somatic Mutations in Cancer : COSMICCCL15 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)17:34324618-34329084
Mutations and Diseases : HGMDCCL15
OMIM601393   
MedgenCCL15
GENETestsCCL15
Disease Genetic AssociationCCL15
Huge Navigator CCL15 [HugePedia]  CCL15 [HugeCancerGEM]
Genomic VariantsCCL15  CCL15 [DGVbeta]
Exome VariantCCL15
dbVarCCL15
ClinVarCCL15
snp3D : Map Gene to Disease6359
General knowledge
Homologs : HomoloGeneCCL15
Homology/Alignments : Family Browser (UCSC)CCL15
Phylogenetic Trees/Animal Genes : TreeFamCCL15
Chemical/Protein Interactions : CTD6359
Chemical/Pharm GKB GenePA35546
Clinical trialCCL15
Cancer Resource (Charite)ENSG00000267596
Other databases
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
CoreMineCCL15
GoPubMedCCL15
iHOPCCL15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:16:33 CET 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.