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CCL25 (C-C motif chemokine ligand 25)

Identity

Alias_namesSCYA25
small inducible cytokine subfamily A (Cys-Cys), member 25
chemokine (C-C motif) ligand 25
Alias_symbol (synonym)TECK
Ckb15
Other alias
HGNC (Hugo) CCL25
LocusID (NCBI) 6370
Atlas_Id 50273
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 8117646 and ends at 8127547 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCL25   10624
Cards
Entrez_Gene (NCBI)CCL25  6370  C-C motif chemokine ligand 25
AliasesCkb15; SCYA25; TECK
GeneCards (Weizmann)CCL25
Ensembl hg19 (Hinxton)ENSG00000131142 [Gene_View]  chr19:8117646-8127547 [Contig_View]  CCL25 [Vega]
Ensembl hg38 (Hinxton)ENSG00000131142 [Gene_View]  chr19:8117646-8127547 [Contig_View]  CCL25 [Vega]
ICGC DataPortalENSG00000131142
TCGA cBioPortalCCL25
AceView (NCBI)CCL25
Genatlas (Paris)CCL25
WikiGenes6370
SOURCE (Princeton)CCL25
Genetics Home Reference (NIH)CCL25
Genomic and cartography
GoldenPath hg19 (UCSC)CCL25  -     chr19:8117646-8127547 +  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCL25  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblCCL25 - 19p13.2 [CytoView hg19]  CCL25 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBICCL25 [Mapview hg19]  CCL25 [Mapview hg38]
OMIM602565   
Gene and transcription
Genbank (Entrez)AB046579 AI313430 AI961745 AK292662 BC125136
RefSeq transcript (Entrez)NM_001201359 NM_005624 NM_148888
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929413
Consensus coding sequences : CCDS (NCBI)CCL25
Cluster EST : UnigeneHs.310511 [ NCBI ]
CGAP (NCI)Hs.310511
Alternative Splicing GalleryENSG00000131142
Gene ExpressionCCL25 [ NCBI-GEO ]   CCL25 [ EBI - ARRAY_EXPRESS ]   CCL25 [ SEEK ]   CCL25 [ MEM ]
Gene Expression Viewer (FireBrowse)CCL25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6370
GTEX Portal (Tissue expression)CCL25
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15444   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15444  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15444
Splice isoforms : SwissVarO15444
PhosPhoSitePlusO15444
Domains : Interpro (EBI)Chemokine_IL8-like_dom   
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
Conserved Domain (NCBI)CCL25
DMDM Disease mutations6370
Blocks (Seattle)CCL25
SuperfamilyO15444
Human Protein AtlasENSG00000131142
Peptide AtlasO15444
HPRD03976
IPIIPI00292032   IPI00292033   IPI00792660   IPI00953485   
Protein Interaction databases
DIP (DOE-UCLA)O15444
IntAct (EBI)O15444
FunCoupENSG00000131142
BioGRIDCCL25
STRING (EMBL)CCL25
ZODIACCCL25
Ontologies - Pathways
QuickGOO15444
Ontology : AmiGOpositive regulation of cell-matrix adhesion  monocyte chemotaxis  hormone activity  extracellular region  extracellular space  chemotaxis  inflammatory response  immune response  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  chemokine activity  neutrophil chemotaxis  CCR10 chemokine receptor binding  chemokine receptor binding  positive regulation of GTPase activity  lymphocyte chemotaxis  cell chemotaxis  chemokine-mediated signaling pathway  positive regulation of ERK1 and ERK2 cascade  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to tumor necrosis factor  negative regulation of leukocyte tethering or rolling  
Ontology : EGO-EBIpositive regulation of cell-matrix adhesion  monocyte chemotaxis  hormone activity  extracellular region  extracellular space  chemotaxis  inflammatory response  immune response  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  chemokine activity  neutrophil chemotaxis  CCR10 chemokine receptor binding  chemokine receptor binding  positive regulation of GTPase activity  lymphocyte chemotaxis  cell chemotaxis  chemokine-mediated signaling pathway  positive regulation of ERK1 and ERK2 cascade  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to tumor necrosis factor  negative regulation of leukocyte tethering or rolling  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway    Intestinal immune network for IgA production   
NDEx NetworkCCL25
Atlas of Cancer Signalling NetworkCCL25
Wikipedia pathwaysCCL25
Orthology - Evolution
OrthoDB6370
GeneTree (enSembl)ENSG00000131142
Phylogenetic Trees/Animal Genes : TreeFamCCL25
HOVERGENO15444
HOGENOMO15444
Homologs : HomoloGeneCCL25
Homology/Alignments : Family Browser (UCSC)CCL25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCL25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCL25
dbVarCCL25
ClinVarCCL25
1000_GenomesCCL25 
Exome Variant ServerCCL25
ExAC (Exome Aggregation Consortium)CCL25 (select the gene name)
Genetic variants : HAPMAP6370
Genomic Variants (DGV)CCL25 [DGVbeta]
DECIPHER (Syndromes)19:8117646-8127547  ENSG00000131142
CONAN: Copy Number AnalysisCCL25 
Mutations
ICGC Data PortalCCL25 
TCGA Data PortalCCL25 
Broad Tumor PortalCCL25
OASIS PortalCCL25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCL25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCL25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCL25
DgiDB (Drug Gene Interaction Database)CCL25
DoCM (Curated mutations)CCL25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCL25 (select a term)
intoGenCCL25
Cancer3DCCL25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602565   
Orphanet
MedgenCCL25
Genetic Testing Registry CCL25
NextProtO15444 [Medical]
TSGene6370
GENETestsCCL25
Huge Navigator CCL25 [HugePedia]
snp3D : Map Gene to Disease6370
BioCentury BCIQCCL25
ClinGenCCL25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6370
Chemical/Pharm GKB GenePA35556
Clinical trialCCL25
Miscellaneous
canSAR (ICR)CCL25 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCL25
EVEXCCL25
GoPubMedCCL25
iHOPCCL25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:59:06 CET 2017

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