Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCL26 (C-C motif chemokine ligand 26)

Identity

Alias_namesSCYA26
small inducible cytokine subfamily A (Cys-Cys), member 26
chemokine (C-C motif) ligand 26
Alias_symbol (synonym)MIP-4alpha
eotaxin-3
IMAC
MIP-4a
TSC-1
Other alias
HGNC (Hugo) CCL26
LocusID (NCBI) 10344
Atlas_Id 51681
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 75769524 and ends at 75789746 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCL26   10625
Cards
Entrez_Gene (NCBI)CCL26  10344  C-C motif chemokine ligand 26
AliasesIMAC; MIP-4a; MIP-4alpha; SCYA26; 
TSC-1
GeneCards (Weizmann)CCL26
Ensembl hg19 (Hinxton)ENSG00000006606 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006606 [Gene_View]  chr7:75769524-75789746 [Contig_View]  CCL26 [Vega]
ICGC DataPortalENSG00000006606
TCGA cBioPortalCCL26
AceView (NCBI)CCL26
Genatlas (Paris)CCL26
WikiGenes10344
SOURCE (Princeton)CCL26
Genetics Home Reference (NIH)CCL26
Genomic and cartography
GoldenPath hg38 (UCSC)CCL26  -     chr7:75769524-75789746 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCL26  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblCCL26 - 7q11.23 [CytoView hg19]  CCL26 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBICCL26 [Mapview hg19]  CCL26 [Mapview hg38]
OMIM604697   
Gene and transcription
Genbank (Entrez)AA926779 AB010447 AB016542 AF096296 AF124601
RefSeq transcript (Entrez)NM_006072
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCL26
Cluster EST : UnigeneHs.131342 [ NCBI ]
CGAP (NCI)Hs.131342
Alternative Splicing GalleryENSG00000006606
Gene ExpressionCCL26 [ NCBI-GEO ]   CCL26 [ EBI - ARRAY_EXPRESS ]   CCL26 [ SEEK ]   CCL26 [ MEM ]
Gene Expression Viewer (FireBrowse)CCL26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10344
GTEX Portal (Tissue expression)CCL26
Human Protein AtlasENSG00000006606-CCL26 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y258   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y258  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y258
Splice isoforms : SwissVarQ9Y258
PhosPhoSitePlusQ9Y258
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CC (PS00472)   
Domains : Interpro (EBI)Chemokine_CC_CS    Chemokine_IL8-like_dom   
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
Conserved Domain (NCBI)CCL26
DMDM Disease mutations10344
Blocks (Seattle)CCL26
PDB (SRS)1G2S    1G2T   
PDB (PDBSum)1G2S    1G2T   
PDB (IMB)1G2S    1G2T   
PDB (RSDB)1G2S    1G2T   
Structural Biology KnowledgeBase1G2S    1G2T   
SCOP (Structural Classification of Proteins)1G2S    1G2T   
CATH (Classification of proteins structures)1G2S    1G2T   
SuperfamilyQ9Y258
Human Protein Atlas [tissue]ENSG00000006606-CCL26 [tissue]
Peptide AtlasQ9Y258
HPRD05262
IPIIPI00031757   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y258
IntAct (EBI)Q9Y258
FunCoupENSG00000006606
BioGRIDCCL26
STRING (EMBL)CCL26
ZODIACCCL26
Ontologies - Pathways
QuickGOQ9Y258
Ontology : AmiGOpositive regulation of endothelial cell proliferation  monocyte chemotaxis  monocyte chemotaxis  extracellular space  extracellular space  chemotaxis  inflammatory response  signal transduction  G-protein coupled receptor signaling pathway  cell-cell signaling  chemokine activity  chemokine activity  response to organonitrogen compound  T cell chemotaxis  positive regulation of cell migration  neutrophil chemotaxis  positive regulation of actin filament polymerization  CCR3 chemokine receptor binding  positive regulation of GTPase activity  receptor agonist activity  CCR chemokine receptor binding  lymphocyte chemotaxis  positive regulation of chemotaxis  chemokine-mediated signaling pathway  chemokine-mediated signaling pathway  positive regulation of ERK1 and ERK2 cascade  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to tumor necrosis factor  
Ontology : EGO-EBIpositive regulation of endothelial cell proliferation  monocyte chemotaxis  monocyte chemotaxis  extracellular space  extracellular space  chemotaxis  inflammatory response  signal transduction  G-protein coupled receptor signaling pathway  cell-cell signaling  chemokine activity  chemokine activity  response to organonitrogen compound  T cell chemotaxis  positive regulation of cell migration  neutrophil chemotaxis  positive regulation of actin filament polymerization  CCR3 chemokine receptor binding  positive regulation of GTPase activity  receptor agonist activity  CCR chemokine receptor binding  lymphocyte chemotaxis  positive regulation of chemotaxis  chemokine-mediated signaling pathway  chemokine-mediated signaling pathway  positive regulation of ERK1 and ERK2 cascade  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to tumor necrosis factor  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway   
NDEx NetworkCCL26
Atlas of Cancer Signalling NetworkCCL26
Wikipedia pathwaysCCL26
Orthology - Evolution
OrthoDB10344
GeneTree (enSembl)ENSG00000006606
Phylogenetic Trees/Animal Genes : TreeFamCCL26
HOVERGENQ9Y258
HOGENOMQ9Y258
Homologs : HomoloGeneCCL26
Homology/Alignments : Family Browser (UCSC)CCL26
Gene fusions - Rearrangements
html#FUS_TCGA2 TARGET=TCGA_Fusion>Tumor Fusion PortalCCL26
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCL26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCL26
dbVarCCL26
ClinVarCCL26
1000_GenomesCCL26 
Exome Variant ServerCCL26
ExAC (Exome Aggregation Consortium)ENSG00000006606
GNOMAD BrowserENSG00000006606
Genetic variants : HAPMAP10344
Genomic Variants (DGV)CCL26 [DGVbeta]
DECIPHERCCL26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCL26 
Mutations
ICGC Data PortalCCL26 
TCGA Data PortalCCL26 
Broad Tumor PortalCCL26
OASIS PortalCCL26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCL26  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCL26
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCL26
DgiDB (Drug Gene Interaction Database)CCL26
DoCM (Curated mutations)CCL26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCL26 (select a term)
intoGenCCL26
Cancer3DCCL26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604697   
Orphanet
DisGeNETCCL26
MedgenCCL26
Genetic Testing Registry CCL26
NextProtQ9Y258 [Medical]
TSGene10344
GENETestsCCL26
Target ValidationCCL26
Huge Navigator CCL26 [HugePedia]
snp3D : Map Gene to Disease10344
BioCentury BCIQCCL26
ClinGenCCL26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10344
Chemical/Pharm GKB GenePA35557
Clinical trialCCL26
Miscellaneous
canSAR (ICR)CCL26 (select the gene name)
Probes
Litterature
PubMed81 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCL26
EVEXCCL26
GoPubMedCCL26
iHOPCCL26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:06:25 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.