Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCL27 (C-C motif chemokine ligand 27)

Identity

Alias_namesSCYA27
small inducible cytokine subfamily A (Cys-Cys), member 27
chemokine (C-C motif) ligand 27
Alias_symbol (synonym)ALP
ILC
CTACK
skinkine
ESkine
PESKY
CTAK
Other aliasESKINE
HGNC (Hugo) CCL27
LocusID (NCBI) 10850
Atlas_Id 50002
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 34661883 and ends at 34662692 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCL27   10626
Cards
Entrez_Gene (NCBI)CCL27  10850  C-C motif chemokine ligand 27
AliasesALP; CTACK; CTAK; ESKINE; 
ILC; PESKY; SCYA27
GeneCards (Weizmann)CCL27
Ensembl hg19 (Hinxton)ENSG00000213927 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213927 [Gene_View]  chr9:34661883-34662692 [Contig_View]  CCL27 [Vega]
ICGC DataPortalENSG00000213927
TCGA cBioPortalCCL27
AceView (NCBI)CCL27
Genatlas (Paris)CCL27
WikiGenes10850
SOURCE (Princeton)CCL27
Genetics Home Reference (NIH)CCL27
Genomic and cartography
GoldenPath hg38 (UCSC)CCL27  -     chr9:34661883-34662692 -  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCL27  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblCCL27 - 9p13.3 [CytoView hg19]  CCL27 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBICCL27 [Mapview hg19]  CCL27 [Mapview hg38]
OMIM604833   
Gene and transcription
Genbank (Entrez)AB010445 AF082393 AJ243542 BC148263 BC166648
RefSeq transcript (Entrez)NM_006664
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCL27
Cluster EST : UnigeneHs.648124 [ NCBI ]
CGAP (NCI)Hs.648124
Alternative Splicing GalleryENSG00000213927
Gene ExpressionCCL27 [ NCBI-GEO ]   CCL27 [ EBI - ARRAY_EXPRESS ]   CCL27 [ SEEK ]   CCL27 [ MEM ]
Gene Expression Viewer (FireBrowse)CCL27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10850
GTEX Portal (Tissue expression)CCL27
Human Protein AtlasENSG00000213927-CCL27 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4X3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4X3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4X3
Splice isoforms : SwissVarQ9Y4X3
PhosPhoSitePlusQ9Y4X3
Domains : Interpro (EBI)Chemokine_IL8-like_dom   
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Conserved Domain (NCBI)CCL27
DMDM Disease mutations10850
Blocks (Seattle)CCL27
PDB (SRS)2KUM   
PDB (PDBSum)2KUM   
PDB (IMB)2KUM   
PDB (RSDB)2KUM   
Structural Biology KnowledgeBase2KUM   
SCOP (Structural Classification of Proteins)2KUM   
CATH (Classification of proteins structures)2KUM   
SuperfamilyQ9Y4X3
Human Protein Atlas [tissue]ENSG00000213927-CCL27 [tissue]
Peptide AtlasQ9Y4X3
HPRD05321
IPIIPI00001116   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4X3
IntAct (EBI)Q9Y4X3
FunCoupENSG00000213927
BioGRIDCCL27
STRING (EMBL)CCL27
ZODIACCCL27
Ontologies - Pathways
QuickGOQ9Y4X3
Ontology : AmiGOextracellular region  extracellular space  chemotaxis  immune response  cell-cell signaling  chemokine activity  cell chemotaxis  
Ontology : EGO-EBIextracellular region  extracellular space  chemotaxis  immune response  cell-cell signaling  chemokine activity  cell chemotaxis  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway   
NDEx NetworkCCL27
Atlas of Cancer Signalling NetworkCCL27
Wikipedia pathwaysCCL27
Orthology - Evolution
OrthoDB10850
GeneTree (enSembl)ENSG00000213927
Phylogenetic Trees/Animal Genes : TreeFamCCL27
HOVERGENQ9Y4X3
HOGENOMQ9Y4X3
Homologs : HomoloGeneCCL27
Homology/Alignments : Family Browser (UCSC)CCL27
Gene fusions - Rearrangements
Tumor Fusion PortalCCL27
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCL27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCL27
dbVarCCL27
ClinVarCCL27
1000_GenomesCCL27 
Exome Variant ServerCCL27
ExAC (Exome Aggregation Consortium)ENSG00000213927
GNOMAD BrowserENSG00000213927
Genetic variants : HAPMAP10850
Genomic Variants (DGV)CCL27 [DGVbeta]
DECIPHERCCL27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCL27 
Mutations
ICGC Data PortalCCL27 
TCGA Data PortalCCL27 
Broad Tumor PortalCCL27
OASIS PortalCCL27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCL27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCL27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCL27
DgiDB (Drug Gene Interaction Database)CCL27
DoCM (Curated mutations)CCL27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCL27 (select a term)
intoGenCCL27
Cancer3DCCL27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604833   
Orphanet
DisGeNETCCL27
MedgenCCL27
Genetic Testing Registry CCL27
NextProtQ9Y4X3 [Medical]
TSGene10850
GENETestsCCL27
Target ValidationCCL27
Huge Navigator CCL27 [HugePedia]
snp3D : Map Gene to Disease10850
BioCentury BCIQCCL27
ClinGenCCL27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10850
Chemical/Pharm GKB GenePA35558
Clinical trialCCL27
Miscellaneous
canSAR (ICR)CCL27 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCL27
EVEXCCL27
GoPubMedCCL27
iHOPCCL27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:06:25 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.