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CCL28 (C-C motif chemokine ligand 28)

Identity

Alias_nameschemokine (C-C motif) ligand 28
Alias_symbol (synonym)SCYA28
MEC
CCK1
Other alias
HGNC (Hugo) CCL28
LocusID (NCBI) 56477
Atlas_Id 52369
Location 5p12  [Link to chromosome band 5p12]
Location_base_pair Starts at 43376646 and ends at 43412391 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BORCS7 (10q24.32) / CCL28 (5p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCL28   17700
Cards
Entrez_Gene (NCBI)CCL28  56477  C-C motif chemokine ligand 28
AliasesCCK1; MEC; SCYA28
GeneCards (Weizmann)CCL28
Ensembl hg19 (Hinxton)ENSG00000151882 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151882 [Gene_View]  chr5:43376646-43412391 [Contig_View]  CCL28 [Vega]
ICGC DataPortalENSG00000151882
TCGA cBioPortalCCL28
AceView (NCBI)CCL28
Genatlas (Paris)CCL28
WikiGenes56477
SOURCE (Princeton)CCL28
Genetics Home Reference (NIH)CCL28
Genomic and cartography
GoldenPath hg38 (UCSC)CCL28  -     chr5:43376646-43412391 -  5p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCL28  -     5p12   [Description]    (hg19-Feb_2009)
EnsemblCCL28 - 5p12 [CytoView hg19]  CCL28 - 5p12 [CytoView hg38]
Mapping of homologs : NCBICCL28 [Mapview hg19]  CCL28 [Mapview hg38]
OMIM605240   
Gene and transcription
Genbank (Entrez)AF110384 AF220210 AF266504 AK307307 AK312120
RefSeq transcript (Entrez)NM_001301873 NM_001301874 NM_001301875 NM_019846 NM_148672
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCL28
Cluster EST : UnigeneHs.656904 [ NCBI ]
CGAP (NCI)Hs.656904
Alternative Splicing GalleryENSG00000151882
Gene ExpressionCCL28 [ NCBI-GEO ]   CCL28 [ EBI - ARRAY_EXPRESS ]   CCL28 [ SEEK ]   CCL28 [ MEM ]
Gene Expression Viewer (FireBrowse)CCL28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56477
GTEX Portal (Tissue expression)CCL28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRJ3
Splice isoforms : SwissVarQ9NRJ3
PhosPhoSitePlusQ9NRJ3
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CC (PS00472)   
Domains : Interpro (EBI)Chemokine_CC_CS    Chemokine_IL8-like_dom   
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Conserved Domain (NCBI)CCL28
DMDM Disease mutations56477
Blocks (Seattle)CCL28
SuperfamilyQ9NRJ3
Human Protein AtlasENSG00000151882
Peptide AtlasQ9NRJ3
HPRD05577
IPIIPI00016593   IPI00969385   IPI00965000   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRJ3
IntAct (EBI)Q9NRJ3
FunCoupENSG00000151882
BioGRIDCCL28
STRING (EMBL)CCL28
ZODIACCCL28
Ontologies - Pathways
QuickGOQ9NRJ3
Ontology : AmiGOpositive regulation of cell-matrix adhesion  protein binding  extracellular region  extracellular space  cell  chemotaxis  immune response  positive regulation of cytosolic calcium ion concentration  response to nutrient  chemokine activity  chemokine activity  cell chemotaxis  extracellular exosome  negative regulation of leukocyte tethering or rolling  
Ontology : EGO-EBIpositive regulation of cell-matrix adhesion  protein binding  extracellular region  extracellular space  cell  chemotaxis  immune response  positive regulation of cytosolic calcium ion concentration  response to nutrient  chemokine activity  chemokine activity  cell chemotaxis  extracellular exosome  negative regulation of leukocyte tethering or rolling  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway    Intestinal immune network for IgA production   
NDEx NetworkCCL28
Atlas of Cancer Signalling NetworkCCL28
Wikipedia pathwaysCCL28
Orthology - Evolution
OrthoDB56477
GeneTree (enSembl)ENSG00000151882
Phylogenetic Trees/Animal Genes : TreeFamCCL28
HOVERGENQ9NRJ3
HOGENOMQ9NRJ3
Homologs : HomoloGeneCCL28
Homology/Alignments : Family Browser (UCSC)CCL28
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCL28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCL28
dbVarCCL28
ClinVarCCL28
1000_GenomesCCL28 
Exome Variant ServerCCL28
ExAC (Exome Aggregation Consortium)CCL28 (select the gene name)
Genetic variants : HAPMAP56477
Genomic Variants (DGV)CCL28 [DGVbeta]
DECIPHERCCL28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCL28 
Mutations
ICGC Data PortalCCL28 
TCGA Data PortalCCL28 
Broad Tumor PortalCCL28
OASIS PortalCCL28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCL28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCL28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCL28
DgiDB (Drug Gene Interaction Database)CCL28
DoCM (Curated mutations)CCL28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCL28 (select a term)
intoGenCCL28
Cancer3DCCL28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605240   
Orphanet
MedgenCCL28
Genetic Testing Registry CCL28
NextProtQ9NRJ3 [Medical]
TSGene56477
GENETestsCCL28
Target ValidationCCL28
Huge Navigator CCL28 [HugePedia]
snp3D : Map Gene to Disease56477
BioCentury BCIQCCL28
ClinGenCCL28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56477
Chemical/Pharm GKB GenePA38463
Clinical trialCCL28
Miscellaneous
canSAR (ICR)CCL28 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCL28
EVEXCCL28
GoPubMedCCL28
iHOPCCL28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:04 CEST 2017

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