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CCL3L1 (C-C motif chemokine ligand 3 like 1)

Identity

Alias_namesD17S1718
SCYA3L
SCYA3L1
small inducible cytokine A3-like 1
chemokine (C-C motif) ligand 3-like 1
Alias_symbol (synonym)G0S19-2
LD78BETA
Other alias464.2
LD78
LD78-beta(1-70)
MIP1AP
HGNC (Hugo) CCL3L1
LocusID (NCBI) 6349
Atlas_Id 55347
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36194870 and ends at 36196758 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCL3L1   10628
Cards
Entrez_Gene (NCBI)CCL3L1  6349  C-C motif chemokine ligand 3 like 1
Aliases464.2; D17S1718; G0S19-2; LD78; 
LD78-beta(1-70); LD78BETA; MIP1AP; SCYA3L; SCYA3L1
GeneCards (Weizmann)CCL3L1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:36194870-36196758 [Contig_View]  CCL3L1 [Vega]
TCGA cBioPortalCCL3L1
AceView (NCBI)CCL3L1
Genatlas (Paris)CCL3L1
WikiGenes6349
SOURCE (Princeton)CCL3L1
Genetics Home Reference (NIH)CCL3L1
Genomic and cartography
GoldenPath hg38 (UCSC)CCL3L1  -     chr17:36194870-36196758 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCL3L1  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblCCL3L1 - 17q12 [CytoView hg19]  CCL3L1 - 17q12 [CytoView hg38]
Mapping of homologs : NCBICCL3L1 [Mapview hg19]  CCL3L1 [Mapview hg38]
OMIM601395   609423   
Gene and transcription
Genbank (Entrez)AA362164 AV739733 BC027888 BC107710 BC146914
RefSeq transcript (Entrez)NM_021006
RefSeq genomic (Entrez)NG_023369 NT_187661
Consensus coding sequences : CCDS (NCBI)CCL3L1
Cluster EST : UnigeneHs.512683 [ NCBI ]
CGAP (NCI)Hs.512683
Gene ExpressionCCL3L1 [ NCBI-GEO ]   CCL3L1 [ EBI - ARRAY_EXPRESS ]   CCL3L1 [ SEEK ]   CCL3L1 [ MEM ]
Gene Expression Viewer (FireBrowse)CCL3L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6349
GTEX Portal (Tissue expression)CCL3L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16619   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP16619  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16619
Splice isoforms : SwissVarP16619
PhosPhoSitePlusP16619
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CC (PS00472)   
Domains : Interpro (EBI)Chemokine_CC_CS    Chemokine_IL8-like_dom   
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
Conserved Domain (NCBI)CCL3L1
DMDM Disease mutations6349
Blocks (Seattle)CCL3L1
SuperfamilyP16619
Peptide AtlasP16619
HPRD03234
Protein Interaction databases
DIP (DOE-UCLA)P16619
IntAct (EBI)P16619
BioGRIDCCL3L1
STRING (EMBL)CCL3L1
ZODIACCCL3L1
Ontologies - Pathways
QuickGOP16619
Ontology : AmiGOmonocyte chemotaxis  extracellular region  extracellular space  inflammatory response  inflammatory response  G-protein coupled receptor signaling pathway  chemokine activity  negative regulation of cell proliferation  neutrophil chemotaxis  positive regulation of GTPase activity  CCR chemokine receptor binding  lymphocyte chemotaxis  chemokine-mediated signaling pathway  positive regulation of ERK1 and ERK2 cascade  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to tumor necrosis factor  
Ontology : EGO-EBImonocyte chemotaxis  extracellular region  extracellular space  inflammatory response  inflammatory response  G-protein coupled receptor signaling pathway  chemokine activity  negative regulation of cell proliferation  neutrophil chemotaxis  positive regulation of GTPase activity  CCR chemokine receptor binding  lymphocyte chemotaxis  chemokine-mediated signaling pathway  positive regulation of ERK1 and ERK2 cascade  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to tumor necrosis factor  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway    Toll-like receptor signaling pathway    Salmonella infection    Chagas disease (American trypanosomiasis)    Rheumatoid arthritis   
NDEx NetworkCCL3L1
Atlas of Cancer Signalling NetworkCCL3L1
Wikipedia pathwaysCCL3L1
Orthology - Evolution
OrthoDB6349
Phylogenetic Trees/Animal Genes : TreeFamCCL3L1
HOVERGENP16619
HOGENOMP16619
Homologs : HomoloGeneCCL3L1
Homology/Alignments : Family Browser (UCSC)CCL3L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCL3L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCL3L1
dbVarCCL3L1
ClinVarCCL3L1
1000_GenomesCCL3L1 
Exome Variant ServerCCL3L1
ExAC (Exome Aggregation Consortium)CCL3L1 (select the gene name)
Genetic variants : HAPMAP6349
Genomic Variants (DGV)CCL3L1 [DGVbeta]
DECIPHERCCL3L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCL3L1 
Mutations
ICGC Data PortalCCL3L1 
TCGA Data PortalCCL3L1 
Broad Tumor PortalCCL3L1
OASIS PortalCCL3L1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCL3L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCL3L1
DgiDB (Drug Gene Interaction Database)CCL3L1
DoCM (Curated mutations)CCL3L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCL3L1 (select a term)
intoGenCCL3L1
Cancer3DCCL3L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601395    609423   
Orphanet
MedgenCCL3L1
Genetic Testing Registry CCL3L1
NextProtP16619 [Medical]
TSGene6349
GENETestsCCL3L1
Target ValidationCCL3L1
Huge Navigator CCL3L1 [HugePedia]
snp3D : Map Gene to Disease6349
BioCentury BCIQCCL3L1
ClinGenCCL3L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6349
Chemical/Pharm GKB GenePA35560
Clinical trialCCL3L1
Miscellaneous
canSAR (ICR)CCL3L1 (select the gene name)
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCL3L1
EVEXCCL3L1
GoPubMedCCL3L1
iHOPCCL3L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:27:08 CEST 2017

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