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CCL4L1 (chemokine (C-C motif) ligand 4-like 1)

Identity

Alias_namesSCYA4L
CCL4L
small inducible cytokine A4-like
chemokine (C-C motif) ligand 4-like
chemokine (C-C motif) ligand 4-like 1
Alias_symbol (synonym)AT744.2
LAG-1
Other aliasLAG1
MIP-1-beta
SCYA4L1
SCYA4L2
HGNC (Hugo) CCL4L1
LocusID (NCBI) 388372
Atlas_Id 55670
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 34538310 and ends at 34540280 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCL4L1   10631
Cards
Entrez_Gene (NCBI)CCL4L1  388372  chemokine (C-C motif) ligand 4-like 1
AliasesAT744.2; CCL4L; LAG-1; LAG1; 
MIP-1-beta; SCYA4L; SCYA4L1; SCYA4L2
GeneCards (Weizmann)CCL4L1
Ensembl hg19 (Hinxton) [Gene_View]  chr17:34538310-34540280 [Contig_View]  CCL4L1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:34538310-34540280 [Contig_View]  CCL4L1 [Vega]
TCGA cBioPortalCCL4L1
AceView (NCBI)CCL4L1
Genatlas (Paris)CCL4L1
WikiGenes388372
SOURCE (Princeton)CCL4L1
Genetics Home Reference (NIH)CCL4L1
Genomic and cartography
GoldenPath hg19 (UCSC)CCL4L1  -     chr17:34538310-34540280 +  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCL4L1  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblCCL4L1 - 17q12 [CytoView hg19]  CCL4L1 - 17q12 [CytoView hg38]
Mapping of homologs : NCBICCL4L1 [Mapview hg19]  CCL4L1 [Mapview hg38]
OMIM603782   
Gene and transcription
Genbank (Entrez)AY766447 AY766449 BC070310 BC130456 BC130458
RefSeq transcript (Entrez)NM_207007
RefSeq genomic (Entrez)NT_187661
Consensus coding sequences : CCDS (NCBI)CCL4L1
Cluster EST : UnigeneHs.515183 [ NCBI ]
CGAP (NCI)Hs.515183
Gene ExpressionCCL4L1 [ NCBI-GEO ]   CCL4L1 [ EBI - ARRAY_EXPRESS ]   CCL4L1 [ SEEK ]   CCL4L1 [ MEM ]
Gene Expression Viewer (FireBrowse)CCL4L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388372
GTEX Portal (Tissue expression)CCL4L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHW4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHW4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHW4
Splice isoforms : SwissVarQ8NHW4
PhosPhoSitePlusQ8NHW4
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CC (PS00472)   
Domains : Interpro (EBI)Chemokine_CC_CS    Chemokine_IL8-like_dom   
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
Conserved Domain (NCBI)CCL4L1
DMDM Disease mutations388372
Blocks (Seattle)CCL4L1
SuperfamilyQ8NHW4
Peptide AtlasQ8NHW4
HPRD16689
IPIIPI00873565   IPI00377046   IPI00604771   IPI00877019   IPI00745043   IPI00604648   IPI00791533   IPI00792183   IPI00887535   IPI00604479   IPI00604668   IPI01018240   IPI00941525   IPI01012518   IPI01014581   IPI00428492   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHW4
IntAct (EBI)Q8NHW4
BioGRIDCCL4L1
STRING (EMBL)CCL4L1
ZODIACCCL4L1
Ontologies - Pathways
QuickGOQ8NHW4
Ontology : AmiGOmonocyte chemotaxis  protein binding  extracellular space  inflammatory response  G-protein coupled receptor signaling pathway  chemokine activity  neutrophil chemotaxis  positive regulation of GTPase activity  CCR chemokine receptor binding  lymphocyte chemotaxis  positive regulation of inflammatory response  chemokine-mediated signaling pathway  positive regulation of ERK1 and ERK2 cascade  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to tumor necrosis factor  
Ontology : EGO-EBImonocyte chemotaxis  protein binding  extracellular space  inflammatory response  G-protein coupled receptor signaling pathway  chemokine activity  neutrophil chemotaxis  positive regulation of GTPase activity  CCR chemokine receptor binding  lymphocyte chemotaxis  positive regulation of inflammatory response  chemokine-mediated signaling pathway  positive regulation of ERK1 and ERK2 cascade  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to tumor necrosis factor  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway    NF-kappa B signaling pathway    Toll-like receptor signaling pathway    Cytosolic DNA-sensing pathway    Salmonella infection   
NDEx NetworkCCL4L1
Atlas of Cancer Signalling NetworkCCL4L1
Wikipedia pathwaysCCL4L1
Orthology - Evolution
OrthoDB388372
Phylogenetic Trees/Animal Genes : TreeFamCCL4L1
HOVERGENQ8NHW4
HOGENOMQ8NHW4
Homologs : HomoloGeneCCL4L1
Homology/Alignments : Family Browser (UCSC)CCL4L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCL4L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCL4L1
dbVarCCL4L1
ClinVarCCL4L1
1000_GenomesCCL4L1 
Exome Variant ServerCCL4L1
ExAC (Exome Aggregation Consortium)CCL4L1 (select the gene name)
Genetic variants : HAPMAP388372
Genomic Variants (DGV)CCL4L1 [DGVbeta]
DECIPHER (Syndromes)17:34538310-34540280  
CONAN: Copy Number AnalysisCCL4L1 
Mutations
ICGC Data PortalCCL4L1 
TCGA Data PortalCCL4L1 
Broad Tumor PortalCCL4L1
OASIS PortalCCL4L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCL4L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCL4L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCL4L1
DgiDB (Drug Gene Interaction Database)CCL4L1
DoCM (Curated mutations)CCL4L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCL4L1 (select a term)
intoGenCCL4L1
Cancer3DCCL4L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603782   
Orphanet
MedgenCCL4L1
Genetic Testing Registry CCL4L1
NextProtQ8NHW4 [Medical]
TSGene388372
GENETestsCCL4L1
Huge Navigator CCL4L1 [HugePedia]
snp3D : Map Gene to Disease388372
BioCentury BCIQCCL4L1
ClinGenCCL4L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388372
Chemical/Pharm GKB GenePA142672157
Clinical trialCCL4L1
Miscellaneous
canSAR (ICR)CCL4L1 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCL4L1
EVEXCCL4L1
GoPubMedCCL4L1
iHOPCCL4L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 14:55:24 CEST 2017

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