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CCL4L2 (chemokine (C-C motif) ligand 4-like 2)

Identity

Alias_nameschemokine (C-C motif) ligand 4-like 2
Other aliasAT744.2
CCL4L
SCYA4L
SCYQ4L2
HGNC (Hugo) CCL4L2
LocusID (NCBI) 9560
Atlas_Id 61591
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 34538465 and ends at 34540280 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCL4L2   24066
Cards
Entrez_Gene (NCBI)CCL4L2  9560  chemokine (C-C motif) ligand 4-like 2
AliasesAT744.2; CCL4L; SCYA4L; SCYQ4L2
GeneCards (Weizmann)CCL4L2
Ensembl hg19 (Hinxton)ENSG00000276070 [Gene_View]  chr17:34538465-34540280 [Contig_View]  CCL4L2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000276070 [Gene_View]  chr17:34538465-34540280 [Contig_View]  CCL4L2 [Vega]
ICGC DataPortalENSG00000276070
TCGA cBioPortalCCL4L2
AceView (NCBI)CCL4L2
Genatlas (Paris)CCL4L2
WikiGenes9560
SOURCE (Princeton)CCL4L2
Genetics Home Reference (NIH)CCL4L2
Genomic and cartography
GoldenPath hg19 (UCSC)CCL4L2  -     chr17:34538465-34540280 +  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCL4L2  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblCCL4L2 - 17q12 [CytoView hg19]  CCL4L2 - 17q12 [CytoView hg38]
Mapping of homologs : NCBICCL4L2 [Mapview hg19]  CCL4L2 [Mapview hg38]
OMIM610757   
Gene and transcription
Genbank (Entrez)AY766450 AY766451 AY766452 AY766453 AY766454
RefSeq transcript (Entrez)NM_001001435 NM_001291468 NM_001291469 NM_001291470 NM_001291471 NM_001291472 NM_001291473 NM_001291474 NM_001291475
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NT_187614 NT_187661 NW_004929407
Consensus coding sequences : CCDS (NCBI)CCL4L2
Cluster EST : UnigeneHs.515183 [ NCBI ]
CGAP (NCI)Hs.515183
Alternative Splicing GalleryENSG00000276070
Gene ExpressionCCL4L2 [ NCBI-GEO ]   CCL4L2 [ EBI - ARRAY_EXPRESS ]   CCL4L2 [ SEEK ]   CCL4L2 [ MEM ]
Gene Expression Viewer (FireBrowse)CCL4L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9560
GTEX Portal (Tissue expression)CCL4L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHW4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHW4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHW4
Splice isoforms : SwissVarQ8NHW4
PhosPhoSitePlusQ8NHW4
Domaine pattern : Prosite (Expaxy)SMALL_CYTOKINES_CC (PS00472)   
Domains : Interpro (EBI)Chemokine_CC_CS    Chemokine_IL8-like_dom   
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
Domain families : Smart (EMBL)SCY (SM00199)  
Conserved Domain (NCBI)CCL4L2
DMDM Disease mutations9560
Blocks (Seattle)CCL4L2
SuperfamilyQ8NHW4
Human Protein AtlasENSG00000276070
Peptide AtlasQ8NHW4
HPRD16030
Protein Interaction databases
DIP (DOE-UCLA)Q8NHW4
IntAct (EBI)Q8NHW4
FunCoupENSG00000276070
BioGRIDCCL4L2
STRING (EMBL)CCL4L2
ZODIACCCL4L2
Ontologies - Pathways
QuickGOQ8NHW4
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway    NF-kappa B signaling pathway    Toll-like receptor signaling pathway    Cytosolic DNA-sensing pathway    Salmonella infection   
NDEx NetworkCCL4L2
Atlas of Cancer Signalling NetworkCCL4L2
Wikipedia pathwaysCCL4L2
Orthology - Evolution
OrthoDB9560
GeneTree (enSembl)ENSG00000276070
Phylogenetic Trees/Animal Genes : TreeFamCCL4L2
HOVERGENQ8NHW4
HOGENOMQ8NHW4
Homologs : HomoloGeneCCL4L2
Homology/Alignments : Family Browser (UCSC)CCL4L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCL4L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCL4L2
dbVarCCL4L2
ClinVarCCL4L2
1000_GenomesCCL4L2 
Exome Variant ServerCCL4L2
ExAC (Exome Aggregation Consortium)CCL4L2 (select the gene name)
Genetic variants : HAPMAP9560
Genomic Variants (DGV)CCL4L2 [DGVbeta]
DECIPHER (Syndromes)17:34538465-34540280  ENSG00000276070
CONAN: Copy Number AnalysisCCL4L2 
Mutations
ICGC Data PortalCCL4L2 
TCGA Data PortalCCL4L2 
Broad Tumor PortalCCL4L2
OASIS PortalCCL4L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCL4L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCL4L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCL4L2
DgiDB (Drug Gene Interaction Database)CCL4L2
DoCM (Curated mutations)CCL4L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCL4L2 (select a term)
intoGenCCL4L2
Cancer3DCCL4L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610757   
Orphanet
MedgenCCL4L2
Genetic Testing Registry CCL4L2
NextProtQ8NHW4 [Medical]
TSGene9560
GENETestsCCL4L2
Huge Navigator CCL4L2 [HugePedia]
snp3D : Map Gene to Disease9560
BioCentury BCIQCCL4L2
ClinGenCCL4L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9560
Chemical/Pharm GKB GenePA35563
Clinical trialCCL4L2
Miscellaneous
canSAR (ICR)CCL4L2 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCL4L2
EVEXCCL4L2
GoPubMedCCL4L2
iHOPCCL4L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:44 CET 2017

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