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CCNC (cyclin C)

Identity

Other namesCycC
HGNC (Hugo) CCNC
LocusID (NCBI) 892
Location 6q16.2
Location_base_pair Starts at 99990263 and ends at 100016690 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CCNC   1581
Cards
Entrez_Gene (NCBI)CCNC  892  cyclin C
GeneCards (Weizmann)CCNC
Ensembl (Hinxton)ENSG00000112237 [Gene_View]  chr6:99990263-100016690 [Contig_View]  CCNC [Vega]
AceView (NCBI)CCNC
Genatlas (Paris)CCNC
WikiGenes892
SOURCE (Princeton)NM_001013399 NM_005190
Genomic and cartography
GoldenPath (UCSC)CCNC  -  6q16.2   chr6:99990263-100016690 -  6q16.2   [Description]    (hg19-Feb_2009)
EnsemblCCNC - 6q16.2 [CytoView]
Mapping of homologs : NCBICCNC [Mapview]
OMIM123838   
Gene and transcription
Genbank (Entrez)AB125137 AK130983 AK222768 AK223247 AK291914
RefSeq transcript (Entrez)NM_001013399 NM_005190
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838988 NW_004929328
Consensus coding sequences : CCDS (NCBI)CCNC
Cluster EST : UnigeneHs.633351 [ NCBI ]
CGAP (NCI)Hs.633351
Alternative Splicing : Fast-db (Paris)GSHG0026799
Alternative Splicing GalleryENSG00000112237
Gene ExpressionCCNC [ NCBI-GEO ]     CCNC [ SEEK ]   CCNC [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP24863 (Uniprot)
NextProtP24863  [Medical]
With graphics : InterProP24863
Splice isoforms : SwissVarP24863 (Swissvar)
Domaine pattern : Prosite (Expaxy)CYCLINS (PS00292)   
Domains : Interpro (EBI)Cyclin-like    Cyclin_C/H/T/L    Cyclin_N    CyclinC   
Related proteins : CluSTrP24863
Domain families : Pfam (Sanger)Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  
DMDM Disease mutations892
Blocks (Seattle)P24863
PDB (SRS)3RGF    4F6S    4F6U    4F6W    4F70    4F7J    4F7L    4F7N    4F7S    4G6L   
PDB (PDBSum)3RGF    4F6S    4F6U    4F6W    4F70    4F7J    4F7L    4F7N    4F7S    4G6L   
PDB (IMB)3RGF    4F6S    4F6U    4F6W    4F70    4F7J    4F7L    4F7N    4F7S    4G6L   
PDB (RSDB)3RGF    4F6S    4F6U    4F6W    4F70    4F7J    4F7L    4F7N    4F7S    4G6L   
Human Protein AtlasENSG00000112237
Peptide AtlasP24863
HPRD00456
IPIIPI00031076   IPI00552945   IPI00979024   IPI00979643   IPI00554688   IPI00975792   IPI00973344   IPI00978264   IPI00977088   IPI00985495   IPI00974477   
Protein Interaction databases
DIP (DOE-UCLA)P24863
IntAct (EBI)P24863
FunCoupENSG00000112237
BioGRIDCCNC
InParanoidP24863
Interologous Interaction database P24863
IntegromeDBCCNC
STRING (EMBL)CCNC
Ontologies - Pathways
Ontology : AmiGOregulation of cyclin-dependent protein serine/threonine kinase activity  protein binding  nucleoplasm  transcription, DNA-templated  transcription initiation from RNA polymerase II promoter  transforming growth factor beta receptor signaling pathway  Notch signaling pathway  gene expression  DNA-directed RNA polymerase II, holoenzyme  mediator complex  protein kinase binding  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIregulation of cyclin-dependent protein serine/threonine kinase activity  protein binding  nucleoplasm  transcription, DNA-templated  transcription initiation from RNA polymerase II promoter  transforming growth factor beta receptor signaling pathway  Notch signaling pathway  gene expression  DNA-directed RNA polymerase II, holoenzyme  mediator complex  protein kinase binding  positive regulation of transcription from RNA polymerase II promoter  
REACTOMECCNC
Protein Interaction DatabaseCCNC
Wikipedia pathwaysCCNC
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CCNC
SNP (GeneSNP Utah)CCNC
SNP : HGBaseCCNC
Genetic variants : HAPMAPCCNC
1000_GenomesCCNC 
ICGC programENSG00000112237 
Somatic Mutations in Cancer : COSMICCCNC 
CONAN: Copy Number AnalysisCCNC 
Mutations and Diseases : HGMDCCNC
OMIM123838   
GENETestsCCNC
Disease Genetic AssociationCCNC
Huge Navigator CCNC [HugePedia]  CCNC [HugeCancerGEM]
Genomic VariantsCCNC  CCNC [DGVbeta]
Exome VariantCCNC
dbVarCCNC
ClinVarCCNC
snp3D : Map Gene to Disease892
General knowledge
Homologs : HomoloGeneCCNC
Homology/Alignments : Family Browser (UCSC)CCNC
Phylogenetic Trees/Animal Genes : TreeFamCCNC
Chemical/Protein Interactions : CTD892
Chemical/Pharm GKB GenePA26149
Clinical trialCCNC
Cancer Resource (Charite)ENSG00000112237
Other databases
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
CoreMineCCNC
iHOPCCNC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Mar 31 09:25:04 CEST 2014

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