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CCNC (cyclin C)

Identity

Other namesCycC
HGNC (Hugo) CCNC
LocusID (NCBI) 892
Location 6q16.2
Location_base_pair Starts at 99990263 and ends at 100016690 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CCNC   1581
Entrez_Gene (NCBI)CCNC  892  cyclin C
Cards
GeneCards (Weizmann)CCNC
Ensembl (Hinxton)ENSG00000112237 [Gene_View]  chr6:99990263-100016690 [Contig_View]  CCNC [Vega]
AceView (NCBI)CCNC
Genatlas (Paris)CCNC
SOURCE (Stanford)NM_001013399 NM_005190
Genomic and cartography
GoldenPath (UCSC)CCNC  -  6q16.2   chr6:99990263-100016690 -  6q16.2   [Description]    (hg19-Feb_2009)
EnsemblCCNC - 6q16.2 [CytoView]
Mapping of homologs : NCBICCNC [Mapview]
OMIM123838   
Gene and transcription
Genbank (Entrez)AB125137 AK130983 AK222768 AK223247 AK291914
RefSeq transcript (SRS)NM_001013399 NM_005190
RefSeq transcript (Entrez)NM_001013399 NM_005190
RefSeq genomic (SRS)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838988 NW_004078028
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838988 NW_004078028
Consensus coding sequences : CCDS (NCBI)CCNC
Cluster EST : UnigeneHs.633351 [ SRS ] Hs.633351 [ NCBI ]
CGAP (NCI)Hs.633351
Alternative Splicing : Fast-db (Paris)GSHG0026799
Alternative Splicing GalleryENSG00000112237
Gene ExpressionCCNC [ NCBI-GEO ]   CCNC [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP24863 (SRS) P24863 (Uniprot)
NextProtP24863
With graphics : InterProP24863
Splice isoforms : SwissVarP24863(Swissvar)
Domaine pattern : Prosite (SRS)CYCLINS (PS00292)   
Domaine pattern : Prosite (Expaxy)CYCLINS (PS00292)   
Domains : Interpro (SRS)Cyclin-like    Cyclin_C/H/T/L    Cyclin_N    CyclinC   
Domains : Interpro (EBI)Cyclin-like    Cyclin_C/H/T/L    Cyclin_N    CyclinC   
Related proteins : CluSTrP24863
Domain families : Pfam (SRS)Cyclin_N (PF00134)   
Domain families : Pfam (Sanger)Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  
DMDM892
Blocks (Seattle)P24863
PDB (SRS)3RGF   
PDB (PDBSum)3RGF   
PDB (IMB)3RGF   
PDB (RSDB)3RGF   
Human Protein AtlasENSG00000112237
HPRD00456
IPIIPI00031076   IPI00552945   IPI00979024   IPI00979643   IPI00554688   IPI00975792   IPI00973344   IPI00978264   IPI00977088   IPI00985495   IPI00974477   
Protein Interaction databases
DIP (DOE-UCLA)P24863
IntAct (EBI)P24863
FunCoupENSG00000112237
REACTOMECCNC
Protein Interaction Database892
BioGRIDCCNC
InParanoidP24863
Interologous Interaction database P24863
IntegromeDBCCNC
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CCNC
SNP (GeneSNP Utah)CCNC
SNP : HGBaseCCNC
Genetic variants : HAPMAPCCNC
Somatic Mutations in Cancer : COSMICCCNC 
CONAN: Copy Number AnalysisCCNC 
Mutations and Diseases : HGMDCCNC
OMIM123838   
GENETests123838   
Disease Genetic AssociationCCNC
Huge Navigator CCNC [HugePedia]  CCNC [HugeCancerGEM]
Genomic VariantsCCNC  CCNC [DGVbeta]
ClinVarCCNC
snp3D : Map Gene to Disease892
General knowledge
Homologs : HomoloGeneCCNC
Homology/Alignments : Family Browser (UCSC)CCNC
Phylogenetic Trees/Animal Genes : TreeFamCCNC
Chemical/Protein Interactions : CTD892
Chemical/Pharm GKB GenePA26149
Clinical trialCCNC
Cancer Resource (Charite)ENSG00000112237
Ontology : AmiGOregulation of cyclin-dependent protein serine/threonine kinase activity  protein binding  nucleoplasm  transcription, DNA-dependent  transcription initiation from RNA polymerase II promoter  transforming growth factor beta receptor signaling pathway  Notch signaling pathway  gene expression  DNA-directed RNA polymerase II, holoenzyme  mediator complex  protein kinase binding  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIregulation of cyclin-dependent protein serine/threonine kinase activity  protein binding  nucleoplasm  transcription, DNA-dependent  transcription initiation from RNA polymerase II promoter  transforming growth factor beta receptor signaling pathway  Notch signaling pathway  gene expression  DNA-directed RNA polymerase II, holoenzyme  mediator complex  protein kinase binding  positive regulation of transcription from RNA polymerase II promoter  
Other databases
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
PubGeneCCNC
iHOPCCNC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:44:20 CEST 2013
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