Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CCNC (cyclin C)

Identity

Other namesCycC
HGNC (Hugo) CCNC
LocusID (NCBI) 892
Atlas_Id 954
Location 6q16.2  [Link to chromosome band 6q16]
Location_base_pair Starts at 99990263 and ends at 100016690 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCNC   1581
Cards
Entrez_Gene (NCBI)CCNC  892  cyclin C
AliasesCycC
GeneCards (Weizmann)CCNC
Ensembl hg19 (Hinxton)ENSG00000112237 [Gene_View]  chr6:99990263-100016690 [Contig_View]  CCNC [Vega]
Ensembl hg38 (Hinxton)ENSG00000112237 [Gene_View]  chr6:99990263-100016690 [Contig_View]  CCNC [Vega]
ICGC DataPortalENSG00000112237
TCGA cBioPortalCCNC
AceView (NCBI)CCNC
Genatlas (Paris)CCNC
WikiGenes892
SOURCE (Princeton)CCNC
Genomic and cartography
GoldenPath hg19 (UCSC)CCNC  -     chr6:99990263-100016690 -  6q16.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCNC  -     6q16.2   [Description]    (hg38-Dec_2013)
EnsemblCCNC - 6q16.2 [CytoView hg19]  CCNC - 6q16.2 [CytoView hg38]
Mapping of homologs : NCBICCNC [Mapview hg19]  CCNC [Mapview hg38]
OMIM123838   
Gene and transcription
Genbank (Entrez)AB125137 AK130983 AK222768 AK223247 AK291914
RefSeq transcript (Entrez)NM_001013399 NM_005190
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_025741 NW_004929328
Consensus coding sequences : CCDS (NCBI)CCNC
Cluster EST : UnigeneHs.633351 [ NCBI ]
CGAP (NCI)Hs.633351
Alternative Splicing GalleryENSG00000112237
Gene ExpressionCCNC [ NCBI-GEO ]   CCNC [ EBI - ARRAY_EXPRESS ]   CCNC [ SEEK ]   CCNC [ MEM ]
Gene Expression Viewer (FireBrowse)CCNC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)892
GTEX Portal (Tissue expression)CCNC
Protein : pattern, domain, 3D structure
UniProt/SwissProtP24863 (Uniprot)
NextProtP24863  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP24863
Splice isoforms : SwissVarP24863 (Swissvar)
PhosPhoSitePlusP24863
Domains : Interpro (EBI)Cyclin-like    Cyclin_C_2    Cyclin_N   
Domain families : Pfam (Sanger)Cyclin_C_2 (PF16899)    Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam16899    pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  
DMDM Disease mutations892
Blocks (Seattle)CCNC
PDB (SRS)3RGF    4CRL    4F6S    4F6U    4F6W    4F70    4F7J    4F7L    4F7N    4F7S    4G6L    5BNJ    5FGK    5HBE    5HBH    5HBJ   
PDB (PDBSum)3RGF    4CRL    4F6S    4F6U    4F6W    4F70    4F7J    4F7L    4F7N    4F7S    4G6L    5BNJ    5FGK    5HBE    5HBH    5HBJ   
PDB (IMB)3RGF    4CRL    4F6S    4F6U    4F6W    4F70    4F7J    4F7L    4F7N    4F7S    4G6L    5BNJ    5FGK    5HBE    5HBH    5HBJ   
PDB (RSDB)3RGF    4CRL    4F6S    4F6U    4F6W    4F70    4F7J    4F7L    4F7N    4F7S    4G6L    5BNJ    5FGK    5HBE    5HBH    5HBJ   
Structural Biology KnowledgeBase3RGF    4CRL    4F6S    4F6U    4F6W    4F70    4F7J    4F7L    4F7N    4F7S    4G6L    5BNJ    5FGK    5HBE    5HBH    5HBJ   
SCOP (Structural Classification of Proteins)3RGF    4CRL    4F6S    4F6U    4F6W    4F70    4F7J    4F7L    4F7N    4F7S    4G6L    5BNJ    5FGK    5HBE    5HBH    5HBJ   
CATH (Classification of proteins structures)3RGF    4CRL    4F6S    4F6U    4F6W    4F70    4F7J    4F7L    4F7N    4F7S    4G6L    5BNJ    5FGK    5HBE    5HBH    5HBJ   
SuperfamilyP24863
Human Protein AtlasENSG00000112237
Peptide AtlasP24863
HPRD00456
IPIIPI00031076   IPI00552945   IPI00979024   IPI00979643   IPI00554688   IPI00975792   IPI00973344   IPI00978264   IPI00977088   IPI00985495   IPI00974477   
Protein Interaction databases
DIP (DOE-UCLA)P24863
IntAct (EBI)P24863
FunCoupENSG00000112237
BioGRIDCCNC
STRING (EMBL)CCNC
ZODIACCCNC
Ontologies - Pathways
QuickGOP24863
Ontology : AmiGOubiquitin ligase complex  cyclin-dependent protein kinase holoenzyme complex  protein serine/threonine kinase activity  protein binding  nucleus  nucleoplasm  transcription initiation from RNA polymerase II promoter  protein phosphorylation  cyclin-dependent protein serine/threonine kinase regulator activity  protein ubiquitination  mediator complex  positive regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  ubiquitin protein ligase activity  negative regulation of triglyceride metabolic process  positive regulation of phosphorylation of RNA polymerase II C-terminal domain  
Ontology : EGO-EBIubiquitin ligase complex  cyclin-dependent protein kinase holoenzyme complex  protein serine/threonine kinase activity  protein binding  nucleus  nucleoplasm  transcription initiation from RNA polymerase II promoter  protein phosphorylation  cyclin-dependent protein serine/threonine kinase regulator activity  protein ubiquitination  mediator complex  positive regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  ubiquitin protein ligase activity  negative regulation of triglyceride metabolic process  positive regulation of phosphorylation of RNA polymerase II C-terminal domain  
NDEx Network
Atlas of Cancer Signalling NetworkCCNC
Wikipedia pathwaysCCNC
Orthology - Evolution
OrthoDB892
GeneTree (enSembl)ENSG00000112237
Phylogenetic Trees/Animal Genes : TreeFamCCNC
Homologs : HomoloGeneCCNC
Homology/Alignments : Family Browser (UCSC)CCNC
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCCNC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNC
dbVarCCNC
ClinVarCCNC
1000_GenomesCCNC 
Exome Variant ServerCCNC
ExAC (Exome Aggregation Consortium)CCNC (select the gene name)
Genetic variants : HAPMAP892
Genomic Variants (DGV)CCNC [DGVbeta]
Mutations
ICGC Data PortalCCNC 
TCGA Data PortalCCNC 
Broad Tumor PortalCCNC
OASIS PortalCCNC [ Somatic mutations - Copy number]
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCNC
DgiDB (Drug Gene Interaction Database)CCNC
DoCM (Curated mutations)CCNC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCNC (select a term)
intoGenCCNC
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)6:99990263-100016690  ENSG00000112237
CONAN: Copy Number AnalysisCCNC 
Mutations and Diseases : HGMDCCNC
OMIM123838   
MedgenCCNC
Genetic Testing Registry CCNC
NextProtP24863 [Medical]
TSGene892
GENETestsCCNC
Huge Navigator CCNC [HugePedia]
snp3D : Map Gene to Disease892
BioCentury BCIQCCNC
ClinGenCCNC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD892
Chemical/Pharm GKB GenePA26149
Clinical trialCCNC
Miscellaneous
canSAR (ICR)CCNC (select the gene name)
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCNC
EVEXCCNC
GoPubMedCCNC
iHOPCCNC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 9 19:00:00 CEST 2016

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