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CCNF (cyclin F)

Identity

Alias_symbol (synonym)FBX1
FBXO1
Other alias
HGNC (Hugo) CCNF
LocusID (NCBI) 899
Atlas_Id 958
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2479395 and ends at 2508859 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCNF (16p13.3) / CCNF (16p13.3)CCNF (16p13.3) / CFAP206 (6q15)PDPK1 (16p13.3) / CCNF (16p13.3)
PDPK1 16p13.3 / CCNF 16p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCNF   1591
Cards
Entrez_Gene (NCBI)CCNF  899  cyclin F
AliasesFBX1; FBXO1
GeneCards (Weizmann)CCNF
Ensembl hg19 (Hinxton)ENSG00000162063 [Gene_View]  chr16:2479395-2508859 [Contig_View]  CCNF [Vega]
Ensembl hg38 (Hinxton)ENSG00000162063 [Gene_View]  chr16:2479395-2508859 [Contig_View]  CCNF [Vega]
ICGC DataPortalENSG00000162063
TCGA cBioPortalCCNF
AceView (NCBI)CCNF
Genatlas (Paris)CCNF
WikiGenes899
SOURCE (Princeton)CCNF
Genetics Home Reference (NIH)CCNF
Genomic and cartography
GoldenPath hg19 (UCSC)CCNF  -     chr16:2479395-2508859 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCNF  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblCCNF - 16p13.3 [CytoView hg19]  CCNF - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICCNF [Mapview hg19]  CCNF [Mapview hg38]
OMIM600227   
Gene and transcription
Genbank (Entrez)AB208829 AK313371 BC012349 DA960397 DB523776
RefSeq transcript (Entrez)NM_001761
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)CCNF
Cluster EST : UnigeneHs.1973 [ NCBI ]
CGAP (NCI)Hs.1973
Alternative Splicing GalleryENSG00000162063
Gene ExpressionCCNF [ NCBI-GEO ]   CCNF [ EBI - ARRAY_EXPRESS ]   CCNF [ SEEK ]   CCNF [ MEM ]
Gene Expression Viewer (FireBrowse)CCNF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)899
GTEX Portal (Tissue expression)CCNF
Protein : pattern, domain, 3D structure
UniProt/SwissProtP41002   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP41002  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP41002
Splice isoforms : SwissVarP41002
PhosPhoSitePlusP41002
Domaine pattern : Prosite (Expaxy)CYCLINS (PS00292)    FBOX (PS50181)   
Domains : Interpro (EBI)CCNF_metazoan    Cyclin-like    Cyclin_C-dom    Cyclin_N    F-box_dom    TPR-like_helical_dom   
Domain families : Pfam (Sanger)Cyclin_C (PF02984)    Cyclin_N (PF00134)    F-box (PF00646)   
Domain families : Pfam (NCBI)pfam02984    pfam00134    pfam00646   
Domain families : Smart (EMBL)CYCLIN (SM00385)  FBOX (SM00256)  
Conserved Domain (NCBI)CCNF
DMDM Disease mutations899
Blocks (Seattle)CCNF
SuperfamilyP41002
Human Protein AtlasENSG00000162063
Peptide AtlasP41002
HPRD02574
IPIIPI00297860   IPI00871799   
Protein Interaction databases
DIP (DOE-UCLA)P41002
IntAct (EBI)P41002
FunCoupENSG00000162063
BioGRIDCCNF
STRING (EMBL)CCNF
ZODIACCCNF
Ontologies - Pathways
QuickGOP41002
Ontology : AmiGOre-entry into mitotic cell cycle  placenta development  protein binding  nucleus  centriole  mitotic nuclear division  negative regulation of centrosome duplication  protein ubiquitination  SCF ubiquitin ligase complex  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  cell division  
Ontology : EGO-EBIre-entry into mitotic cell cycle  placenta development  protein binding  nucleus  centriole  mitotic nuclear division  negative regulation of centrosome duplication  protein ubiquitination  SCF ubiquitin ligase complex  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  cell division  
NDEx NetworkCCNF
Atlas of Cancer Signalling NetworkCCNF
Wikipedia pathwaysCCNF
Orthology - Evolution
OrthoDB899
GeneTree (enSembl)ENSG00000162063
Phylogenetic Trees/Animal Genes : TreeFamCCNF
HOVERGENP41002
HOGENOMP41002
Homologs : HomoloGeneCCNF
Homology/Alignments : Family Browser (UCSC)CCNF
Gene fusions - Rearrangements
Fusion : Mitelman-/16p13.3 [CCNF/del(16)(p13p13)]  
Fusion : MitelmanPDPK1/CCNF [16p13.3/16p13.3]  [t(16;16)(p13;p13)]  
Fusion: TCGAPDPK1 16p13.3 CCNF 16p13.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNF
dbVarCCNF
ClinVarCCNF
1000_GenomesCCNF 
Exome Variant ServerCCNF
ExAC (Exome Aggregation Consortium)CCNF (select the gene name)
Genetic variants : HAPMAP899
Genomic Variants (DGV)CCNF [DGVbeta]
DECIPHER (Syndromes)16:2479395-2508859  ENSG00000162063
CONAN: Copy Number AnalysisCCNF 
Mutations
ICGC Data PortalCCNF 
TCGA Data PortalCCNF 
Broad Tumor PortalCCNF
OASIS PortalCCNF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCNF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCNF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCNF
DgiDB (Drug Gene Interaction Database)CCNF
DoCM (Curated mutations)CCNF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCNF (select a term)
intoGenCCNF
Cancer3DCCNF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600227   
Orphanet
MedgenCCNF
Genetic Testing Registry CCNF
NextProtP41002 [Medical]
TSGene899
GENETestsCCNF
Huge Navigator CCNF [HugePedia]
snp3D : Map Gene to Disease899
BioCentury BCIQCCNF
ClinGenCCNF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD899
Chemical/Pharm GKB GenePA26156
Clinical trialCCNF
Miscellaneous
canSAR (ICR)CCNF (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCNF
EVEXCCNF
GoPubMedCCNF
iHOPCCNF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:55:27 CEST 2017

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