Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CCNH (cyclin H)

Identity

Alias_symbol (synonym)p34
p37
CycH
Other aliasCAK
HGNC (Hugo) CCNH
LocusID (NCBI) 902
Atlas_Id 961
Location 5q14.3  [Link to chromosome band 5q14]
Location_base_pair Starts at 87394262 and ends at 87412904 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CELF2 (10p14) / CCNH (5q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCNH   1594
Cards
Entrez_Gene (NCBI)CCNH  902  cyclin H
AliasesCAK; CycH; p34; p37
GeneCards (Weizmann)CCNH
Ensembl hg19 (Hinxton)ENSG00000134480 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134480 [Gene_View]  chr5:87394262-87412904 [Contig_View]  CCNH [Vega]
ICGC DataPortalENSG00000134480
TCGA cBioPortalCCNH
AceView (NCBI)CCNH
Genatlas (Paris)CCNH
WikiGenes902
SOURCE (Princeton)CCNH
Genetics Home Reference (NIH)CCNH
Genomic and cartography
GoldenPath hg38 (UCSC)CCNH  -     chr5:87394262-87412904 -  5q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCNH  -     5q14.3   [Description]    (hg19-Feb_2009)
EnsemblCCNH - 5q14.3 [CytoView hg19]  CCNH - 5q14.3 [CytoView hg38]
Mapping of homologs : NCBICCNH [Mapview hg19]  CCNH [Mapview hg38]
OMIM601953   
Gene and transcription
Genbank (Entrez)AB209342 AI761780 AK094534 AK291720 BC005280
RefSeq transcript (Entrez)NM_001199189 NM_001239
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCNH
Cluster EST : UnigeneHs.292524 [ NCBI ]
CGAP (NCI)Hs.292524
Alternative Splicing GalleryENSG00000134480
Gene ExpressionCCNH [ NCBI-GEO ]   CCNH [ EBI - ARRAY_EXPRESS ]   CCNH [ SEEK ]   CCNH [ MEM ]
Gene Expression Viewer (FireBrowse)CCNH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)902
GTEX Portal (Tissue expression)CCNH
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51946   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51946  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51946
Splice isoforms : SwissVarP51946
PhosPhoSitePlusP51946
Domains : Interpro (EBI)Cyclin-like    Cyclin_C_2    Cyclin_N    CyclinH/Ccl1   
Domain families : Pfam (Sanger)Cyclin_C_2 (PF16899)    Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam16899    pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  
Conserved Domain (NCBI)CCNH
DMDM Disease mutations902
Blocks (Seattle)CCNH
PDB (SRS)1JKW    1KXU   
PDB (PDBSum)1JKW    1KXU   
PDB (IMB)1JKW    1KXU   
PDB (RSDB)1JKW    1KXU   
Structural Biology KnowledgeBase1JKW    1KXU   
SCOP (Structural Classification of Proteins)1JKW    1KXU   
CATH (Classification of proteins structures)1JKW    1KXU   
SuperfamilyP51946
Human Protein AtlasENSG00000134480
Peptide AtlasP51946
HPRD09059
IPIIPI00021305   IPI00556112   IPI00965191   
Protein Interaction databases
DIP (DOE-UCLA)P51946
IntAct (EBI)P51946
FunCoupENSG00000134480
BioGRIDCCNH
STRING (EMBL)CCNH
ZODIACCCNH
Ontologies - Pathways
QuickGOP51946
Ontology : AmiGOG1/S transition of mitotic cell cycle  G2/M transition of mitotic cell cycle  protein binding  nucleus  nucleoplasm  nucleoplasm  holo TFIIH complex  transcription-coupled nucleotide-excision repair  nucleotide-excision repair, preincision complex assembly  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  7-methylguanosine mRNA capping  protein phosphorylation  DNA-dependent ATPase activity  RNA polymerase II carboxy-terminal domain kinase activity  cyclin-dependent protein serine/threonine kinase regulator activity  cyclin-dependent protein kinase activating kinase holoenzyme complex  cyclin-dependent protein kinase activating kinase holoenzyme complex  positive regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of transcription from RNA polymerase II promoter  protein stabilization  TFIIK complex  positive regulation of phosphorylation of RNA polymerase II C-terminal domain  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  G2/M transition of mitotic cell cycle  protein binding  nucleus  nucleoplasm  nucleoplasm  holo TFIIH complex  transcription-coupled nucleotide-excision repair  nucleotide-excision repair, preincision complex assembly  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  7-methylguanosine mRNA capping  protein phosphorylation  DNA-dependent ATPase activity  RNA polymerase II carboxy-terminal domain kinase activity  cyclin-dependent protein serine/threonine kinase regulator activity  cyclin-dependent protein kinase activating kinase holoenzyme complex  cyclin-dependent protein kinase activating kinase holoenzyme complex  positive regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of transcription from RNA polymerase II promoter  protein stabilization  TFIIK complex  positive regulation of phosphorylation of RNA polymerase II C-terminal domain  
Pathways : BIOCARTACyclins and Cell Cycle Regulation [Genes]    Sonic Hedgehog (SHH) Receptor Ptc1 Regulates cell cycle [Genes]   
Pathways : KEGGBasal transcription factors    Nucleotide excision repair    Cell cycle   
NDEx NetworkCCNH
Atlas of Cancer Signalling NetworkCCNH
Wikipedia pathwaysCCNH
Orthology - Evolution
OrthoDB902
GeneTree (enSembl)ENSG00000134480
Phylogenetic Trees/Animal Genes : TreeFamCCNH
HOVERGENP51946
HOGENOMP51946
Homologs : HomoloGeneCCNH
Homology/Alignments : Family Browser (UCSC)CCNH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNH
dbVarCCNH
ClinVarCCNH
1000_GenomesCCNH 
Exome Variant ServerCCNH
ExAC (Exome Aggregation Consortium)CCNH (select the gene name)
Genetic variants : HAPMAP902
Genomic Variants (DGV)CCNH [DGVbeta]
DECIPHERCCNH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCNH 
Mutations
ICGC Data PortalCCNH 
TCGA Data PortalCCNH 
Broad Tumor PortalCCNH
OASIS PortalCCNH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCNH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCNH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCNH
DgiDB (Drug Gene Interaction Database)CCNH
DoCM (Curated mutations)CCNH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCNH (select a term)
intoGenCCNH
Cancer3DCCNH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601953   
Orphanet
MedgenCCNH
Genetic Testing Registry CCNH
NextProtP51946 [Medical]
TSGene902
GENETestsCCNH
Huge Navigator CCNH [HugePedia]
snp3D : Map Gene to Disease902
BioCentury BCIQCCNH
ClinGenCCNH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD902
Chemical/Pharm GKB GenePA26159
Clinical trialCCNH
Miscellaneous
canSAR (ICR)CCNH (select the gene name)
Probes
Litterature
PubMed133 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCNH
EVEXCCNH
GoPubMedCCNH
iHOPCCNH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:09:23 CEST 2017

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