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CCNI2 (cyclin I family member 2)

Identity

Alias_namescyclin I family, member 2
Alias_symbol (synonym)FLJ16793
Other alias-
HGNC (Hugo) CCNI2
LocusID (NCBI) 645121
Atlas_Id 61594
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 132747445 and ends at 132754403 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AGT (1q42.2) / CCNI2 (5q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCNI2   33869
Cards
Entrez_Gene (NCBI)CCNI2  645121  cyclin I family member 2
Aliases
GeneCards (Weizmann)CCNI2
Ensembl hg19 (Hinxton)ENSG00000205089 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205089 [Gene_View]  chr5:132747445-132754403 [Contig_View]  CCNI2 [Vega]
ICGC DataPortalENSG00000205089
TCGA cBioPortalCCNI2
AceView (NCBI)CCNI2
Genatlas (Paris)CCNI2
WikiGenes645121
SOURCE (Princeton)CCNI2
Genetics Home Reference (NIH)CCNI2
Genomic and cartography
GoldenPath hg38 (UCSC)CCNI2  -     chr5:132747445-132754403 +  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCNI2  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblCCNI2 - 5q31.1 [CytoView hg19]  CCNI2 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBICCNI2 [Mapview hg19]  CCNI2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131553 AW131382 BC132837 BC136836 BC144416
RefSeq transcript (Entrez)NM_001039780 NM_001287252 NM_001287253
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCNI2
Cluster EST : UnigeneHs.714496 [ NCBI ]
CGAP (NCI)Hs.714496
Alternative Splicing GalleryENSG00000205089
Gene ExpressionCCNI2 [ NCBI-GEO ]   CCNI2 [ EBI - ARRAY_EXPRESS ]   CCNI2 [ SEEK ]   CCNI2 [ MEM ]
Gene Expression Viewer (FireBrowse)CCNI2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645121
GTEX Portal (Tissue expression)CCNI2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMN8
Splice isoforms : SwissVarQ6ZMN8
PhosPhoSitePlusQ6ZMN8
Domains : Interpro (EBI)CCNI2    Cyclin-like    Cyclin_N   
Domain families : Pfam (Sanger)Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  
Conserved Domain (NCBI)CCNI2
DMDM Disease mutations645121
Blocks (Seattle)CCNI2
SuperfamilyQ6ZMN8
Human Protein AtlasENSG00000205089
Peptide AtlasQ6ZMN8
IPIIPI00442001   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMN8
IntAct (EBI)Q6ZMN8
FunCoupENSG00000205089
BioGRIDCCNI2
STRING (EMBL)CCNI2
ZODIACCCNI2
Ontologies - Pathways
QuickGOQ6ZMN8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCNI2
Atlas of Cancer Signalling NetworkCCNI2
Wikipedia pathwaysCCNI2
Orthology - Evolution
OrthoDB645121
GeneTree (enSembl)ENSG00000205089
Phylogenetic Trees/Animal Genes : TreeFamCCNI2
HOVERGENQ6ZMN8
HOGENOMQ6ZMN8
Homologs : HomoloGeneCCNI2
Homology/Alignments : Family Browser (UCSC)CCNI2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNI2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNI2
dbVarCCNI2
ClinVarCCNI2
1000_GenomesCCNI2 
Exome Variant ServerCCNI2
ExAC (Exome Aggregation Consortium)CCNI2 (select the gene name)
Genetic variants : HAPMAP645121
Genomic Variants (DGV)CCNI2 [DGVbeta]
DECIPHERCCNI2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCNI2 
Mutations
ICGC Data PortalCCNI2 
TCGA Data PortalCCNI2 
Broad Tumor PortalCCNI2
OASIS PortalCCNI2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCNI2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCNI2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCNI2
DgiDB (Drug Gene Interaction Database)CCNI2
DoCM (Curated mutations)CCNI2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCNI2 (select a term)
intoGenCCNI2
Cancer3DCCNI2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCNI2
Genetic Testing Registry CCNI2
NextProtQ6ZMN8 [Medical]
TSGene645121
GENETestsCCNI2
Target ValidationCCNI2
Huge Navigator CCNI2 [HugePedia]
snp3D : Map Gene to Disease645121
BioCentury BCIQCCNI2
ClinGenCCNI2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645121
Chemical/Pharm GKB GenePA162381968
Clinical trialCCNI2
Miscellaneous
canSAR (ICR)CCNI2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCNI2
EVEXCCNI2
GoPubMedCCNI2
iHOPCCNI2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:18 CEST 2017

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