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CCNJ (cyclin J)

Identity

Alias (NCBI)bA690P14.1
HGNC (Hugo) CCNJ
HGNC Alias symbFLJ10895
bA690P14.1
LocusID (NCBI) 54619
Atlas_Id 54825
Location 10q24.1  [Link to chromosome band 10q24]
Location_base_pair Starts at 96043583 and ends at 96060868 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CCNJ   23434
Cards
Entrez_Gene (NCBI)CCNJ    cyclin J
AliasesbA690P14.1
GeneCards (Weizmann)CCNJ
Ensembl hg19 (Hinxton)ENSG00000107443 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107443 [Gene_View]  ENSG00000107443 [Sequence]  chr10:96043583-96060868 [Contig_View]  CCNJ [Vega]
ICGC DataPortalENSG00000107443
TCGA cBioPortalCCNJ
AceView (NCBI)CCNJ
Genatlas (Paris)CCNJ
SOURCE (Princeton)CCNJ
Genetics Home Reference (NIH)CCNJ
Genomic and cartography
GoldenPath hg38 (UCSC)CCNJ  -     chr10:96043583-96060868 +  10q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCNJ  -     10q24.1   [Description]    (hg19-Feb_2009)
GoldenPathCCNJ - 10q24.1 [CytoView hg19]  CCNJ - 10q24.1 [CytoView hg38]
ImmunoBaseENSG00000107443
Genome Data Viewer NCBICCNJ [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK001757 AK025932 AK092360 AK297264 AK303018
RefSeq transcript (Entrez)NM_001134375 NM_001134376 NM_019084
Consensus coding sequences : CCDS (NCBI)CCNJ
Gene ExpressionCCNJ [ NCBI-GEO ]   CCNJ [ EBI - ARRAY_EXPRESS ]   CCNJ [ SEEK ]   CCNJ [ MEM ]
Gene Expression Viewer (FireBrowse)CCNJ [ Firebrowse - Broad ]
GenevisibleExpression of CCNJ in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54619
GTEX Portal (Tissue expression)CCNJ
Human Protein AtlasENSG00000107443-CCNJ [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T5M9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T5M9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T5M9
PhosPhoSitePlusQ5T5M9
Domains : Interpro (EBI)Cyclin    Cyclin-J    Cyclin-like    Cyclin-like_sf    Cyclin_C-dom    Cyclin_N   
Domain families : Pfam (Sanger)Cyclin_C (PF02984)    Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam02984    pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  Cyclin_C (SM01332)  
Conserved Domain (NCBI)CCNJ
SuperfamilyQ5T5M9
AlphaFold pdb e-kbQ5T5M9   
Human Protein Atlas [tissue]ENSG00000107443-CCNJ [tissue]
HPRD07710
Protein Interaction databases
DIP (DOE-UCLA)Q5T5M9
IntAct (EBI)Q5T5M9
BioGRIDCCNJ
STRING (EMBL)CCNJ
ZODIACCCNJ
Ontologies - Pathways
QuickGOQ5T5M9
Ontology : AmiGOregulation of cyclin-dependent protein serine/threonine kinase activity  cyclin-dependent protein kinase holoenzyme complex  nucleus  cytoplasm  centrosome  cyclin-dependent protein serine/threonine kinase regulator activity  mitotic cell cycle phase transition  
Ontology : EGO-EBIregulation of cyclin-dependent protein serine/threonine kinase activity  cyclin-dependent protein kinase holoenzyme complex  nucleus  cytoplasm  centrosome  cyclin-dependent protein serine/threonine kinase regulator activity  mitotic cell cycle phase transition  
NDEx NetworkCCNJ
Atlas of Cancer Signalling NetworkCCNJ
Wikipedia pathwaysCCNJ
Orthology - Evolution
OrthoDB54619
GeneTree (enSembl)ENSG00000107443
Phylogenetic Trees/Animal Genes : TreeFamCCNJ
Homologs : HomoloGeneCCNJ
Homology/Alignments : Family Browser (UCSC)CCNJ
Gene fusions - Rearrangements
Fusion : QuiverCCNJ
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNJ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNJ
dbVarCCNJ
ClinVarCCNJ
MonarchCCNJ
1000_GenomesCCNJ 
Exome Variant ServerCCNJ
GNOMAD BrowserENSG00000107443
Varsome BrowserCCNJ
ACMGCCNJ variants
VarityQ5T5M9
Genomic Variants (DGV)CCNJ [DGVbeta]
DECIPHERCCNJ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCNJ 
Mutations
ICGC Data PortalCCNJ 
TCGA Data PortalCCNJ 
Broad Tumor PortalCCNJ
OASIS PortalCCNJ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCNJ  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCNJ
Mutations and Diseases : HGMDCCNJ
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCNJ
DgiDB (Drug Gene Interaction Database)CCNJ
DoCM (Curated mutations)CCNJ
CIViC (Clinical Interpretations of Variants in Cancer)CCNJ
Cancer3DCCNJ
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCNJ
MedgenCCNJ
Genetic Testing Registry CCNJ
NextProtQ5T5M9 [Medical]
GENETestsCCNJ
Target ValidationCCNJ
Huge Navigator CCNJ [HugePedia]
ClinGenCCNJ
Clinical trials, drugs, therapy
MyCancerGenomeCCNJ
Protein Interactions : CTDCCNJ
Pharm GKB GenePA134911603
PharosQ5T5M9
Clinical trialCCNJ
Miscellaneous
canSAR (ICR)CCNJ
HarmonizomeCCNJ
DataMed IndexCCNJ
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCNJ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:02:46 CEST 2021

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