Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CCNJ (cyclin J)

Identity

Alias_symbol (synonym)FLJ10895
bA690P14.1
Other alias
HGNC (Hugo) CCNJ
LocusID (NCBI) 54619
Atlas_Id 54825
Location 10q24.1  [Link to chromosome band 10q24]
Location_base_pair Starts at 96043402 and ends at 96060868 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCNJ   23434
Cards
Entrez_Gene (NCBI)CCNJ  54619  cyclin J
AliasesbA690P14.1
GeneCards (Weizmann)CCNJ
Ensembl hg19 (Hinxton)ENSG00000107443 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107443 [Gene_View]  chr10:96043402-96060868 [Contig_View]  CCNJ [Vega]
ICGC DataPortalENSG00000107443
TCGA cBioPortalCCNJ
AceView (NCBI)CCNJ
Genatlas (Paris)CCNJ
WikiGenes54619
SOURCE (Princeton)CCNJ
Genetics Home Reference (NIH)CCNJ
Genomic and cartography
GoldenPath hg38 (UCSC)CCNJ  -     chr10:96043402-96060868 +  10q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCNJ  -     10q24.1   [Description]    (hg19-Feb_2009)
EnsemblCCNJ - 10q24.1 [CytoView hg19]  CCNJ - 10q24.1 [CytoView hg38]
Mapping of homologs : NCBICCNJ [Mapview hg19]  CCNJ [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001757 AK025932 AK092360 AK297264 AK303018
RefSeq transcript (Entrez)NM_001134375 NM_001134376 NM_019084
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCNJ
Cluster EST : UnigeneHs.596479 [ NCBI ]
CGAP (NCI)Hs.596479
Alternative Splicing GalleryENSG00000107443
Gene ExpressionCCNJ [ NCBI-GEO ]   CCNJ [ EBI - ARRAY_EXPRESS ]   CCNJ [ SEEK ]   CCNJ [ MEM ]
Gene Expression Viewer (FireBrowse)CCNJ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54619
GTEX Portal (Tissue expression)CCNJ
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T5M9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T5M9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T5M9
Splice isoforms : SwissVarQ5T5M9
PhosPhoSitePlusQ5T5M9
Domains : Interpro (EBI)Cyclin-J    Cyclin-like    Cyclin_C-dom    Cyclin_N   
Domain families : Pfam (Sanger)Cyclin_C (PF02984)    Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam02984    pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  Cyclin_C (SM01332)  
Conserved Domain (NCBI)CCNJ
DMDM Disease mutations54619
Blocks (Seattle)CCNJ
SuperfamilyQ5T5M9
Human Protein AtlasENSG00000107443
Peptide AtlasQ5T5M9
HPRD07710
IPIIPI00395978   IPI00790138   IPI00908813   
Protein Interaction databases
DIP (DOE-UCLA)Q5T5M9
IntAct (EBI)Q5T5M9
FunCoupENSG00000107443
BioGRIDCCNJ
STRING (EMBL)CCNJ
ZODIACCCNJ
Ontologies - Pathways
QuickGOQ5T5M9
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkCCNJ
Atlas of Cancer Signalling NetworkCCNJ
Wikipedia pathwaysCCNJ
Orthology - Evolution
OrthoDB54619
GeneTree (enSembl)ENSG00000107443
Phylogenetic Trees/Animal Genes : TreeFamCCNJ
HOVERGENQ5T5M9
HOGENOMQ5T5M9
Homologs : HomoloGeneCCNJ
Homology/Alignments : Family Browser (UCSC)CCNJ
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNJ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNJ
dbVarCCNJ
ClinVarCCNJ
1000_GenomesCCNJ 
Exome Variant ServerCCNJ
ExAC (Exome Aggregation Consortium)CCNJ (select the gene name)
Genetic variants : HAPMAP54619
Genomic Variants (DGV)CCNJ [DGVbeta]
DECIPHERCCNJ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCNJ 
Mutations
ICGC Data PortalCCNJ 
TCGA Data PortalCCNJ 
Broad Tumor PortalCCNJ
OASIS PortalCCNJ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCNJ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCNJ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCNJ
DgiDB (Drug Gene Interaction Database)CCNJ
DoCM (Curated mutations)CCNJ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCNJ (select a term)
intoGenCCNJ
Cancer3DCCNJ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCNJ
Genetic Testing Registry CCNJ
NextProtQ5T5M9 [Medical]
TSGene54619
GENETestsCCNJ
Target ValidationCCNJ
Huge Navigator CCNJ [HugePedia]
snp3D : Map Gene to Disease54619
BioCentury BCIQCCNJ
ClinGenCCNJ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54619
Chemical/Pharm GKB GenePA134911603
Clinical trialCCNJ
Miscellaneous
canSAR (ICR)CCNJ (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCNJ
EVEXCCNJ
GoPubMedCCNJ
iHOPCCNJ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:01:03 CEST 2017

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