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CCNJL (cyclin J like)

Identity

Alias_namescyclin J-like
Alias_symbol (synonym)FLJ14166
Other alias-
HGNC (Hugo) CCNJL
LocusID (NCBI) 79616
Atlas_Id 54204
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 160251652 and ends at 160312600 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCNJL (5q33.3) / PLAT (8p11.21)KMT2A (11q23.3) / CCNJL (5q33.3)RNF144A (2p25.2) / CCNJL (5q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCNJL   25876
Cards
Entrez_Gene (NCBI)CCNJL  79616  cyclin J like
Aliases
GeneCards (Weizmann)CCNJL
Ensembl hg19 (Hinxton)ENSG00000135083 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135083 [Gene_View]  chr5:160251652-160312600 [Contig_View]  CCNJL [Vega]
ICGC DataPortalENSG00000135083
TCGA cBioPortalCCNJL
AceView (NCBI)CCNJL
Genatlas (Paris)CCNJL
WikiGenes79616
SOURCE (Princeton)CCNJL
Genetics Home Reference (NIH)CCNJL
Genomic and cartography
GoldenPath hg38 (UCSC)CCNJL  -     chr5:160251652-160312600 -  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCNJL  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblCCNJL - 5q33.3 [CytoView hg19]  CCNJL - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBICCNJL [Mapview hg19]  CCNJL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024228 AK131381 AK294000 AK302823 BC013353
RefSeq transcript (Entrez)NM_001308173 NM_024565
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCNJL
Cluster EST : UnigeneHs.14070 [ NCBI ]
CGAP (NCI)Hs.14070
Alternative Splicing GalleryENSG00000135083
Gene ExpressionCCNJL [ NCBI-GEO ]   CCNJL [ EBI - ARRAY_EXPRESS ]   CCNJL [ SEEK ]   CCNJL [ MEM ]
Gene Expression Viewer (FireBrowse)CCNJL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79616
GTEX Portal (Tissue expression)CCNJL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV13
Splice isoforms : SwissVarQ8IV13
PhosPhoSitePlusQ8IV13
Domains : Interpro (EBI)Cyclin-like    Cyclin_C-dom    Cyclin_N   
Domain families : Pfam (Sanger)Cyclin_C (PF02984)    Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam02984    pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  Cyclin_C (SM01332)  
Conserved Domain (NCBI)CCNJL
DMDM Disease mutations79616
Blocks (Seattle)CCNJL
SuperfamilyQ8IV13
Human Protein AtlasENSG00000135083
Peptide AtlasQ8IV13
HPRD07853
IPIIPI00872466   IPI00973900   IPI00395531   IPI00981814   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV13
IntAct (EBI)Q8IV13
FunCoupENSG00000135083
BioGRIDCCNJL
STRING (EMBL)CCNJL
ZODIACCCNJL
Ontologies - Pathways
QuickGOQ8IV13
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkCCNJL
Atlas of Cancer Signalling NetworkCCNJL
Wikipedia pathwaysCCNJL
Orthology - Evolution
OrthoDB79616
GeneTree (enSembl)ENSG00000135083
Phylogenetic Trees/Animal Genes : TreeFamCCNJL
HOVERGENQ8IV13
HOGENOMQ8IV13
Homologs : HomoloGeneCCNJL
Homology/Alignments : Family Browser (UCSC)CCNJL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNJL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNJL
dbVarCCNJL
ClinVarCCNJL
1000_GenomesCCNJL 
Exome Variant ServerCCNJL
ExAC (Exome Aggregation Consortium)CCNJL (select the gene name)
Genetic variants : HAPMAP79616
Genomic Variants (DGV)CCNJL [DGVbeta]
DECIPHERCCNJL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCNJL 
Mutations
ICGC Data PortalCCNJL 
TCGA Data PortalCCNJL 
Broad Tumor PortalCCNJL
OASIS PortalCCNJL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCNJL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCNJL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCNJL
DgiDB (Drug Gene Interaction Database)CCNJL
DoCM (Curated mutations)CCNJL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCNJL (select a term)
intoGenCCNJL
Cancer3DCCNJL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCNJL
Genetic Testing Registry CCNJL
NextProtQ8IV13 [Medical]
TSGene79616
GENETestsCCNJL
Target ValidationCCNJL
Huge Navigator CCNJL [HugePedia]
snp3D : Map Gene to Disease79616
BioCentury BCIQCCNJL
ClinGenCCNJL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79616
Chemical/Pharm GKB GenePA144596449
Clinical trialCCNJL
Miscellaneous
canSAR (ICR)CCNJL (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCNJL
EVEXCCNJL
GoPubMedCCNJL
iHOPCCNJL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:27:13 CEST 2017

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