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CCNL1 (cyclin L1)

Identity

Alias_symbol (synonym)ania-6a
Other aliasANIA6A
BM-001
PRO1073
HGNC (Hugo) CCNL1
LocusID (NCBI) 57018
Atlas_Id 963
Location 3q25.31  [Link to chromosome band 3q25]
Location_base_pair Starts at 157146502 and ends at 157160760 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAMSAP2 (1q32.1) / CCNL1 (3q25.31)RAB5B (12q13.2) / CCNL1 (3q25.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCNL1   20569
Cards
Entrez_Gene (NCBI)CCNL1  57018  cyclin L1
AliasesANIA6A; BM-001; PRO1073; ania-6a
GeneCards (Weizmann)CCNL1
Ensembl hg19 (Hinxton)ENSG00000163660 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163660 [Gene_View]  chr3:157146502-157160760 [Contig_View]  CCNL1 [Vega]
ICGC DataPortalENSG00000163660
TCGA cBioPortalCCNL1
AceView (NCBI)CCNL1
Genatlas (Paris)CCNL1
WikiGenes57018
SOURCE (Princeton)CCNL1
Genetics Home Reference (NIH)CCNL1
Genomic and cartography
GoldenPath hg38 (UCSC)CCNL1  -     chr3:157146502-157160760 -  3q25.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCNL1  -     3q25.31   [Description]    (hg19-Feb_2009)
EnsemblCCNL1 - 3q25.31 [CytoView hg19]  CCNL1 - 3q25.31 [CytoView hg38]
Mapping of homologs : NCBICCNL1 [Mapview hg19]  CCNL1 [Mapview hg38]
OMIM613384   
Gene and transcription
Genbank (Entrez)AF180920 AF208843 AF367476 AF367477 AK022974
RefSeq transcript (Entrez)NM_001308185 NM_020307
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCNL1
Cluster EST : UnigeneHs.4859 [ NCBI ]
CGAP (NCI)Hs.4859
Alternative Splicing GalleryENSG00000163660
Gene ExpressionCCNL1 [ NCBI-GEO ]   CCNL1 [ EBI - ARRAY_EXPRESS ]   CCNL1 [ SEEK ]   CCNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CCNL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57018
GTEX Portal (Tissue expression)CCNL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK58
Splice isoforms : SwissVarQ9UK58
PhosPhoSitePlusQ9UK58
Domains : Interpro (EBI)Cyclin-like    Cyclin_C-dom    Cyclin_L/T    Cyclin_L1_animal    Cyclin_N   
Domain families : Pfam (Sanger)Cyclin_C (PF02984)    Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam02984    pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  Cyclin_C (SM01332)  
Conserved Domain (NCBI)CCNL1
DMDM Disease mutations57018
Blocks (Seattle)CCNL1
SuperfamilyQ9UK58
Human Protein AtlasENSG00000163660
Peptide AtlasQ9UK58
HPRD10814
IPIIPI00654682   IPI00654772   IPI00186287   IPI00791836   IPI00945314   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK58
IntAct (EBI)Q9UK58
FunCoupENSG00000163660
BioGRIDCCNL1
STRING (EMBL)CCNL1
ZODIACCCNL1
Ontologies - Pathways
QuickGOQ9UK58
Ontology : AmiGOcyclin-dependent protein kinase holoenzyme complex  protein binding  nucleus  transcription, DNA-templated  RNA processing  cyclin-dependent protein serine/threonine kinase regulator activity  nuclear speck  protein kinase binding  positive regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of transcription from RNA polymerase II promoter  positive regulation of phosphorylation of RNA polymerase II C-terminal domain  
Ontology : EGO-EBIcyclin-dependent protein kinase holoenzyme complex  protein binding  nucleus  transcription, DNA-templated  RNA processing  cyclin-dependent protein serine/threonine kinase regulator activity  nuclear speck  protein kinase binding  positive regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of transcription from RNA polymerase II promoter  positive regulation of phosphorylation of RNA polymerase II C-terminal domain  
NDEx NetworkCCNL1
Atlas of Cancer Signalling NetworkCCNL1
Wikipedia pathwaysCCNL1
Orthology - Evolution
OrthoDB57018
GeneTree (enSembl)ENSG00000163660
Phylogenetic Trees/Animal Genes : TreeFamCCNL1
HOVERGENQ9UK58
HOGENOMQ9UK58
Homologs : HomoloGeneCCNL1
Homology/Alignments : Family Browser (UCSC)CCNL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNL1
dbVarCCNL1
ClinVarCCNL1
1000_GenomesCCNL1 
Exome Variant ServerCCNL1
ExAC (Exome Aggregation Consortium)CCNL1 (select the gene name)
Genetic variants : HAPMAP57018
Genomic Variants (DGV)CCNL1 [DGVbeta]
DECIPHERCCNL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCNL1 
Mutations
ICGC Data PortalCCNL1 
TCGA Data PortalCCNL1 
Broad Tumor PortalCCNL1
OASIS PortalCCNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCNL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCNL1
DgiDB (Drug Gene Interaction Database)CCNL1
DoCM (Curated mutations)CCNL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCNL1 (select a term)
intoGenCCNL1
Cancer3DCCNL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613384   
Orphanet
MedgenCCNL1
Genetic Testing Registry CCNL1
NextProtQ9UK58 [Medical]
TSGene57018
GENETestsCCNL1
Huge Navigator CCNL1 [HugePedia]
snp3D : Map Gene to Disease57018
BioCentury BCIQCCNL1
ClinGenCCNL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57018
Chemical/Pharm GKB GenePA134980948
Clinical trialCCNL1
Miscellaneous
canSAR (ICR)CCNL1 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCNL1
EVEXCCNL1
GoPubMedCCNL1
iHOPCCNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:09:24 CEST 2017

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