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CCNO (cyclin O)

Identity

Alias_namesCCNU
cyclin U
Alias_symbol (synonym)UDG2
FLJ22422
UNG2
Other aliasCILD29
HGNC (Hugo) CCNO
LocusID (NCBI) 10309
Atlas_Id 42768
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 55231153 and ends at 55233717 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SKIV2L2 (5q11.2) / CCNO (5q11.2)SKIV2L2 5q11.2 / CCNO 5q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCNO   18576
Cards
Entrez_Gene (NCBI)CCNO  10309  cyclin O
AliasesCCNU; CILD29; UDG2
GeneCards (Weizmann)CCNO
Ensembl hg19 (Hinxton)ENSG00000152669 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152669 [Gene_View]  chr5:55231153-55233717 [Contig_View]  CCNO [Vega]
ICGC DataPortalENSG00000152669
TCGA cBioPortalCCNO
AceView (NCBI)CCNO
Genatlas (Paris)CCNO
WikiGenes10309
SOURCE (Princeton)CCNO
Genetics Home Reference (NIH)CCNO
Genomic and cartography
GoldenPath hg38 (UCSC)CCNO  -     chr5:55231153-55233717 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCNO  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblCCNO - 5q11.2 [CytoView hg19]  CCNO - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBICCNO [Mapview hg19]  CCNO [Mapview hg38]
OMIM607752   615872   
Gene and transcription
Genbank (Entrez)AK026075 AK290030 BC004877 BC017345 BC056254
RefSeq transcript (Entrez)NM_001024592 NM_021147
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCNO
Cluster EST : UnigeneHs.3041 [ NCBI ]
CGAP (NCI)Hs.3041
Alternative Splicing GalleryENSG00000152669
Gene ExpressionCCNO [ NCBI-GEO ]   CCNO [ EBI - ARRAY_EXPRESS ]   CCNO [ SEEK ]   CCNO [ MEM ]
Gene Expression Viewer (FireBrowse)CCNO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10309
GTEX Portal (Tissue expression)CCNO
Protein : pattern, domain, 3D structure
UniProt/SwissProtP22674   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP22674  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP22674
Splice isoforms : SwissVarP22674
PhosPhoSitePlusP22674
Domains : Interpro (EBI)Ccno    Cyclin-like    Cyclin_C-dom    Cyclin_N   
Domain families : Pfam (Sanger)Cyclin_C (PF02984)    Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam02984    pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  Cyclin_C (SM01332)  
Conserved Domain (NCBI)CCNO
DMDM Disease mutations10309
Blocks (Seattle)CCNO
SuperfamilyP22674
Human Protein AtlasENSG00000152669
Peptide AtlasP22674
HPRD06375
IPIIPI00186099   IPI00807451   
Protein Interaction databases
DIP (DOE-UCLA)P22674
IntAct (EBI)P22674
FunCoupENSG00000152669
BioGRIDCCNO
STRING (EMBL)CCNO
ZODIACCCNO
Ontologies - Pathways
QuickGOP22674
Ontology : AmiGOuracil DNA N-glycosylase activity  nucleoplasm  cytoplasm  base-excision repair  cell cycle  response to drug  cell division  cilium assembly  multi-ciliated epithelial cell differentiation  
Ontology : EGO-EBIuracil DNA N-glycosylase activity  nucleoplasm  cytoplasm  base-excision repair  cell cycle  response to drug  cell division  cilium assembly  multi-ciliated epithelial cell differentiation  
NDEx NetworkCCNO
Atlas of Cancer Signalling NetworkCCNO
Wikipedia pathwaysCCNO
Orthology - Evolution
OrthoDB10309
GeneTree (enSembl)ENSG00000152669
Phylogenetic Trees/Animal Genes : TreeFamCCNO
HOVERGENP22674
HOGENOMP22674
Homologs : HomoloGeneCCNO
Homology/Alignments : Family Browser (UCSC)CCNO
Gene fusions - Rearrangements
Fusion : MitelmanSKIV2L2/CCNO [5q11.2/5q11.2]  [t(5;5)(q11;q11)]  
Fusion: TCGASKIV2L2 5q11.2 CCNO 5q11.2 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNO
dbVarCCNO
ClinVarCCNO
1000_GenomesCCNO 
Exome Variant ServerCCNO
ExAC (Exome Aggregation Consortium)CCNO (select the gene name)
Genetic variants : HAPMAP10309
Genomic Variants (DGV)CCNO [DGVbeta]
DECIPHERCCNO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCNO 
Mutations
ICGC Data PortalCCNO 
TCGA Data PortalCCNO 
Broad Tumor PortalCCNO
OASIS PortalCCNO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCNO  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCNO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCNO
DgiDB (Drug Gene Interaction Database)CCNO
DoCM (Curated mutations)CCNO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCNO (select a term)
intoGenCCNO
Cancer3DCCNO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607752    615872   
Orphanet665   
MedgenCCNO
Genetic Testing Registry CCNO
NextProtP22674 [Medical]
TSGene10309
GENETestsCCNO
Target ValidationCCNO
Huge Navigator CCNO [HugePedia]
snp3D : Map Gene to Disease10309
BioCentury BCIQCCNO
ClinGenCCNO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10309
Chemical/Pharm GKB GenePA38350
Clinical trialCCNO
Miscellaneous
canSAR (ICR)CCNO (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCNO
EVEXCCNO
GoPubMedCCNO
iHOPCCNO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:08 CEST 2017

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