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CCNQ (cyclin Q)

Identity

Alias_namesFAM58A
family with sequence similarity 58, member A
family with sequence similarity 58 member A
Other aliasSTAR
HGNC (Hugo) CCNQ
LocusID (NCBI) 92002
Atlas_Id 79048
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153587925 and ends at 153599177 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CCNQ   28434
Cards
Entrez_Gene (NCBI)CCNQ  92002  cyclin Q
AliasesFAM58A; STAR
GeneCards (Weizmann)CCNQ
Ensembl hg19 (Hinxton)ENSG00000262919 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000262919 [Gene_View]  chrX:153587925-153599177 [Contig_View]  CCNQ [Vega]
ICGC DataPortalENSG00000262919
TCGA cBioPortalCCNQ
AceView (NCBI)CCNQ
Genatlas (Paris)CCNQ
WikiGenes92002
SOURCE (Princeton)CCNQ
Genetics Home Reference (NIH)CCNQ
Genomic and cartography
GoldenPath hg38 (UCSC)CCNQ  -     chrX:153587925-153599177 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCNQ  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblCCNQ - Xq28 [CytoView hg19]  CCNQ - Xq28 [CytoView hg38]
Mapping of homologs : NCBICCNQ [Mapview hg19]  CCNQ [Mapview hg38]
OMIM300707   300708   
Gene and transcription
Genbank (Entrez)AL549300 AM393666 AY445048 BC001909 BC007232
RefSeq transcript (Entrez)NM_001130997 NM_152274
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCNQ
Cluster EST : UnigeneHs.496943 [ NCBI ]
CGAP (NCI)Hs.496943
Alternative Splicing GalleryENSG00000262919
Gene ExpressionCCNQ [ NCBI-GEO ]   CCNQ [ EBI - ARRAY_EXPRESS ]   CCNQ [ SEEK ]   CCNQ [ MEM ]
Gene Expression Viewer (FireBrowse)CCNQ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92002
GTEX Portal (Tissue expression)CCNQ
Human Protein AtlasENSG00000262919-CCNQ [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1B3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1B3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1B3
Splice isoforms : SwissVarQ8N1B3
PhosPhoSitePlusQ8N1B3
Domains : Interpro (EBI)Cyclin-like    Cyclin-rel_FAM58    Cyclin_N   
Domain families : Pfam (Sanger)Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  
Conserved Domain (NCBI)CCNQ
DMDM Disease mutations92002
Blocks (Seattle)CCNQ
SuperfamilyQ8N1B3
Human Protein Atlas [tissue]ENSG00000262919-CCNQ [tissue]
Peptide AtlasQ8N1B3
IPIIPI00643557   IPI00647327   IPI00642914   IPI00641042   IPI00646678   IPI00639977   IPI00395371   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1B3
IntAct (EBI)Q8N1B3
FunCoupENSG00000262919
BioGRIDCCNQ
STRING (EMBL)CCNQ
ZODIACCCNQ
Ontologies - Pathways
QuickGOQ8N1B3
Ontology : AmiGOcyclin-dependent protein kinase holoenzyme complex  protein binding  nucleus  cyclin-dependent protein serine/threonine kinase regulator activity  protein kinase activator activity  activation of protein kinase activity  positive regulation of MAPK cascade  positive regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of transcription from RNA polymerase II promoter  positive regulation of phosphorylation of RNA polymerase II C-terminal domain  
Ontology : EGO-EBIcyclin-dependent protein kinase holoenzyme complex  protein binding  nucleus  cyclin-dependent protein serine/threonine kinase regulator activity  protein kinase activator activity  activation of protein kinase activity  positive regulation of MAPK cascade  positive regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of transcription from RNA polymerase II promoter  positive regulation of phosphorylation of RNA polymerase II C-terminal domain  
NDEx NetworkCCNQ
Atlas of Cancer Signalling NetworkCCNQ
Wikipedia pathwaysCCNQ
Orthology - Evolution
OrthoDB92002
GeneTree (enSembl)ENSG00000262919
Phylogenetic Trees/Animal Genes : TreeFamCCNQ
HOVERGENQ8N1B3
HOGENOMQ8N1B3
Homologs : HomoloGeneCCNQ
Homology/Alignments : Family Browser (UCSC)CCNQ
Gene fusions - Rearrangements
Tumor Fusion PortalCCNQ
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNQ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNQ
dbVarCCNQ
ClinVarCCNQ
1000_GenomesCCNQ 
Exome Variant ServerCCNQ
ExAC (Exome Aggregation Consortium)ENSG00000262919
GNOMAD BrowserENSG00000262919
Genetic variants : HAPMAP92002
Genomic Variants (DGV)CCNQ [DGVbeta]
DECIPHERCCNQ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCNQ 
Mutations
ICGC Data PortalCCNQ 
TCGA Data PortalCCNQ 
Broad Tumor PortalCCNQ
OASIS PortalCCNQ [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCNQ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCNQ
DgiDB (Drug Gene Interaction Database)CCNQ
DoCM (Curated mutations)CCNQ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCNQ (select a term)
intoGenCCNQ
Cancer3DCCNQ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300707    300708   
Orphanet
DisGeNETCCNQ
MedgenCCNQ
Genetic Testing Registry CCNQ
NextProtQ8N1B3 [Medical]
TSGene92002
GENETestsCCNQ
Target ValidationCCNQ
Huge Navigator CCNQ [HugePedia]
snp3D : Map Gene to Disease92002
BioCentury BCIQCCNQ
ClinGenCCNQ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92002
Chemical/Pharm GKB GenePA142671863
Clinical trialCCNQ
Miscellaneous
canSAR (ICR)CCNQ (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCNQ
EVEXCCNQ
GoPubMedCCNQ
iHOPCCNQ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:59:17 CET 2017

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