Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCNY (cyclin Y)

Identity

Alias_namesC10orf9
chromosome 10 open reading frame 9
Alias_symbol (synonym)CFP1
CBCP1
Other aliasCCNX
HGNC (Hugo) CCNY
LocusID (NCBI) 219771
Atlas_Id 51503
Location 10p11.21  [Link to chromosome band 10p11]
Location_base_pair Starts at 35336874 and ends at 35572670 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCNY (10p11.21) / AKAP10 (17p11.2)CCNY (10p11.21) / ANK3 (10q21.2)CCNY (10p11.21) / BRAF (7q34)
CCNY (10p11.21) / CCNY (10p11.21)CCNY (10p11.21) / COG3 (13q14.13)CCNY (10p11.21) / CREM (10p11.21)
CCNY (10p11.21) / CUL2 (10p11.21)CCNY (10p11.21) / DENND1A (9q33.3)CCNY (10p11.21) / PARD3 (10p11.22)
CCNY (10p11.21) / PTPRD (9p24.1)CCNY (10p11.21) / ZNF652 (17q21.32)FOXO1 (13q14.11) / CCNY (10p11.21)
WARS (14q32.2) / CCNY (10p11.21)CCNY 10p11.21 / AKAP10 17p11.2CCNY 10p11.21 / ANK3 10q21.2
CCNY 10p11.21 / BRAF 7q34CCNY 10p11.21 / CREM 10p11.21CCNY 10p11.21 / DENND1A 9q33.3
CCNY 10p11.21 / PTPRD 9p24.1WARS 14q32.2 / CCNY 10p11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCNY   23354
Cards
Entrez_Gene (NCBI)CCNY  219771  cyclin Y
AliasesC10orf9; CBCP1; CCNX; CFP1
GeneCards (Weizmann)CCNY
Ensembl hg19 (Hinxton)ENSG00000108100 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108100 [Gene_View]  chr10:35336874-35572670 [Contig_View]  CCNY [Vega]
ICGC DataPortalENSG00000108100
TCGA cBioPortalCCNY
AceView (NCBI)CCNY
Genatlas (Paris)CCNY
WikiGenes219771
SOURCE (Princeton)CCNY
Genetics Home Reference (NIH)CCNY
Genomic and cartography
GoldenPath hg38 (UCSC)CCNY  -     chr10:35336874-35572670 +  10p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCNY  -     10p11.21   [Description]    (hg19-Feb_2009)
EnsemblCCNY - 10p11.21 [CytoView hg19]  CCNY - 10p11.21 [CytoView hg38]
Mapping of homologs : NCBICCNY [Mapview hg19]  CCNY [Mapview hg38]
OMIM612786   
Gene and transcription
Genbank (Entrez)AA476431 AF413522 AF429969 AF465728 AF465729
RefSeq transcript (Entrez)NM_001282852 NM_001282853 NM_001282854 NM_145012 NM_181698
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCNY
Cluster EST : UnigeneHs.714184 [ NCBI ]
CGAP (NCI)Hs.714184
Alternative Splicing GalleryENSG00000108100
Gene ExpressionCCNY [ NCBI-GEO ]   CCNY [ EBI - ARRAY_EXPRESS ]   CCNY [ SEEK ]   CCNY [ MEM ]
Gene Expression Viewer (FireBrowse)CCNY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219771
GTEX Portal (Tissue expression)CCNY
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8ND76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8ND76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8ND76
Splice isoforms : SwissVarQ8ND76
PhosPhoSitePlusQ8ND76
Domains : Interpro (EBI)Cyclin-like    Cyclin_N    Cyclin_Y   
Domain families : Pfam (Sanger)Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  
Conserved Domain (NCBI)CCNY
DMDM Disease mutations219771
Blocks (Seattle)CCNY
SuperfamilyQ8ND76
Human Protein AtlasENSG00000108100
Peptide AtlasQ8ND76
HPRD10700
IPIIPI00465457   IPI00334743   IPI00413625   IPI01009591   
Protein Interaction databases
DIP (DOE-UCLA)Q8ND76
IntAct (EBI)Q8ND76
FunCoupENSG00000108100
BioGRIDCCNY
STRING (EMBL)CCNY
ZODIACCCNY
Ontologies - Pathways
QuickGOQ8ND76
Ontology : AmiGOG2/M transition of mitotic cell cycle  cytoplasmic cyclin-dependent protein kinase holoenzyme complex  protein binding  nucleus  plasma membrane  Wnt signaling pathway  cyclin-dependent protein serine/threonine kinase regulator activity  protein kinase binding  positive regulation of cyclin-dependent protein serine/threonine kinase activity  cell division  regulation of canonical Wnt signaling pathway  extracellular exosome  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  cytoplasmic cyclin-dependent protein kinase holoenzyme complex  protein binding  nucleus  plasma membrane  Wnt signaling pathway  cyclin-dependent protein serine/threonine kinase regulator activity  protein kinase binding  positive regulation of cyclin-dependent protein serine/threonine kinase activity  cell division  regulation of canonical Wnt signaling pathway  extracellular exosome  
NDEx NetworkCCNY
Atlas of Cancer Signalling NetworkCCNY
Wikipedia pathwaysCCNY
Orthology - Evolution
OrthoDB219771
GeneTree (enSembl)ENSG00000108100
Phylogenetic Trees/Animal Genes : TreeFamCCNY
HOVERGENQ8ND76
HOGENOMQ8ND76
Homologs : HomoloGeneCCNY
Homology/Alignments : Family Browser (UCSC)CCNY
Gene fusions - Rearrangements
Fusion : MitelmanCCNY/AKAP10 [10p11.21/17p11.2]  
Fusion : MitelmanCCNY/ANK3 [10p11.21/10q21.2]  [t(10;10)(p11;q21)]  
Fusion : MitelmanCCNY/BRAF [10p11.21/7q34]  [t(7;10)(q34;p11)]  
Fusion : MitelmanCCNY/CREM [10p11.21/10p11.21]  [t(10;10)(p11;p11)]  
Fusion : MitelmanCCNY/DENND1A [10p11.21/9q33.3]  [t(9;10)(q33;p11)]  
Fusion : MitelmanCCNY/PARD3 [10p11.21/10p11.22]  [t(10;10)(p11;p11)]  
Fusion : MitelmanCCNY/PTPRD [10p11.21/9p24.1]  [t(9;10)(p23;p11)]  
Fusion : MitelmanWARS/CCNY [14q32.2/10p11.21]  [t(10;14)(p11;q32)]  
Fusion: TCGACCNY 10p11.21 AKAP10 17p11.2 BRCA
Fusion: TCGACCNY 10p11.21 ANK3 10q21.2 BLCA
Fusion: TCGACCNY 10p11.21 BRAF 7q34 THCA
Fusion: TCGACCNY 10p11.21 CREM 10p11.21 LUSC
Fusion: TCGACCNY 10p11.21 DENND1A 9q33.3 BRCA
Fusion: TCGACCNY 10p11.21 PTPRD 9p24.1 KIRC
Fusion: TCGAWARS 14q32.2 CCNY 10p11.21 THCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNY
dbVarCCNY
ClinVarCCNY
1000_GenomesCCNY 
Exome Variant ServerCCNY
ExAC (Exome Aggregation Consortium)CCNY (select the gene name)
Genetic variants : HAPMAP219771
Genomic Variants (DGV)CCNY [DGVbeta]
DECIPHERCCNY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCNY 
Mutations
ICGC Data PortalCCNY 
TCGA Data PortalCCNY 
Broad Tumor PortalCCNY
OASIS PortalCCNY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCNY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCNY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCNY
DgiDB (Drug Gene Interaction Database)CCNY
DoCM (Curated mutations)CCNY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCNY (select a term)
intoGenCCNY
Cancer3DCCNY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612786   
Orphanet
MedgenCCNY
Genetic Testing Registry CCNY
NextProtQ8ND76 [Medical]
TSGene219771
GENETestsCCNY
Target ValidationCCNY
Huge Navigator CCNY [HugePedia]
snp3D : Map Gene to Disease219771
BioCentury BCIQCCNY
ClinGenCCNY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219771
Chemical/Pharm GKB GenePA162381980
Clinical trialCCNY
Miscellaneous
canSAR (ICR)CCNY (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCNY
EVEXCCNY
GoPubMedCCNY
iHOPCCNY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:57:08 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.