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CCNYL1 (cyclin Y like 1)

Identity

Alias_namescyclin Y-like 1
Alias_symbol (synonym)FLJ40432
Other alias-
HGNC (Hugo) CCNYL1
LocusID (NCBI) 151195
Atlas_Id 61597
Location 2q33.3  [Link to chromosome band 2q33]
Location_base_pair Starts at 207711540 and ends at 207756172 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCNYL1 (2q33.3) / CCNYL1 (2q33.3)CCNYL1 (2q33.3) / IDH1 (2q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCNYL1   26868
Cards
Entrez_Gene (NCBI)CCNYL1  151195  cyclin Y like 1
Aliases
GeneCards (Weizmann)CCNYL1
Ensembl hg19 (Hinxton)ENSG00000163249 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163249 [Gene_View]  chr2:207711540-207756172 [Contig_View]  CCNYL1 [Vega]
ICGC DataPortalENSG00000163249
TCGA cBioPortalCCNYL1
AceView (NCBI)CCNYL1
Genatlas (Paris)CCNYL1
WikiGenes151195
SOURCE (Princeton)CCNYL1
Genetics Home Reference (NIH)CCNYL1
Genomic and cartography
GoldenPath hg38 (UCSC)CCNYL1  -     chr2:207711540-207756172 +  2q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCNYL1  -     2q33.3   [Description]    (hg19-Feb_2009)
EnsemblCCNYL1 - 2q33.3 [CytoView hg19]  CCNYL1 - 2q33.3 [CytoView hg38]
Mapping of homologs : NCBICCNYL1 [Mapview hg19]  CCNYL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA731590 AK026922 AK095479 AK097751 BC047293
RefSeq transcript (Entrez)NM_001142300 NM_001330218 NM_152523
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCNYL1
Cluster EST : UnigeneHs.597952 [ NCBI ]
CGAP (NCI)Hs.597952
Alternative Splicing GalleryENSG00000163249
Gene ExpressionCCNYL1 [ NCBI-GEO ]   CCNYL1 [ EBI - ARRAY_EXPRESS ]   CCNYL1 [ SEEK ]   CCNYL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CCNYL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151195
GTEX Portal (Tissue expression)CCNYL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7R7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7R7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7R7
Splice isoforms : SwissVarQ8N7R7
PhosPhoSitePlusQ8N7R7
Domains : Interpro (EBI)Cyclin-like    Cyclin_N    Cyclin_Y   
Domain families : Pfam (Sanger)Cyclin_N (PF00134)   
Domain families : Pfam (NCBI)pfam00134   
Domain families : Smart (EMBL)CYCLIN (SM00385)  
Conserved Domain (NCBI)CCNYL1
DMDM Disease mutations151195
Blocks (Seattle)CCNYL1
SuperfamilyQ8N7R7
Human Protein AtlasENSG00000163249
Peptide AtlasQ8N7R7
HPRD08809
IPIIPI00871180   IPI00413695   IPI00185371   IPI00924506   IPI00927170   IPI00927422   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7R7
IntAct (EBI)Q8N7R7
FunCoupENSG00000163249
BioGRIDCCNYL1
STRING (EMBL)CCNYL1
ZODIACCCNYL1
Ontologies - Pathways
QuickGOQ8N7R7
Ontology : AmiGOregulation of cyclin-dependent protein serine/threonine kinase activity  protein binding  plasma membrane  spermatogenesis  protein kinase binding  flagellated sperm motility  
Ontology : EGO-EBIregulation of cyclin-dependent protein serine/threonine kinase activity  protein binding  plasma membrane  spermatogenesis  protein kinase binding  flagellated sperm motility  
NDEx NetworkCCNYL1
Atlas of Cancer Signalling NetworkCCNYL1
Wikipedia pathwaysCCNYL1
Orthology - Evolution
OrthoDB151195
GeneTree (enSembl)ENSG00000163249
Phylogenetic Trees/Animal Genes : TreeFamCCNYL1
HOVERGENQ8N7R7
HOGENOMQ8N7R7
Homologs : HomoloGeneCCNYL1
Homology/Alignments : Family Browser (UCSC)CCNYL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNYL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNYL1
dbVarCCNYL1
ClinVarCCNYL1
1000_GenomesCCNYL1 
Exome Variant ServerCCNYL1
ExAC (Exome Aggregation Consortium)CCNYL1 (select the gene name)
Genetic variants : HAPMAP151195
Genomic Variants (DGV)CCNYL1 [DGVbeta]
DECIPHERCCNYL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCNYL1 
Mutations
ICGC Data PortalCCNYL1 
TCGA Data PortalCCNYL1 
Broad Tumor PortalCCNYL1
OASIS PortalCCNYL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCNYL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCNYL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCNYL1
DgiDB (Drug Gene Interaction Database)CCNYL1
DoCM (Curated mutations)CCNYL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCNYL1 (select a term)
intoGenCCNYL1
Cancer3DCCNYL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCNYL1
Genetic Testing Registry CCNYL1
NextProtQ8N7R7 [Medical]
TSGene151195
GENETestsCCNYL1
Huge Navigator CCNYL1 [HugePedia]
snp3D : Map Gene to Disease151195
BioCentury BCIQCCNYL1
ClinGenCCNYL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151195
Chemical/Pharm GKB GenePA162382009
Clinical trialCCNYL1
Miscellaneous
canSAR (ICR)CCNYL1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCNYL1
EVEXCCNYL1
GoPubMedCCNYL1
iHOPCCNYL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:05:06 CEST 2017

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