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CCNYL2 (cyclin Y-like 2 (pseudogene))

Identity

Alias_namesC10orf21
chromosome 10 open reading frame 21
cyclin Y-like 2
Alias_symbol (synonym)bA178A10.2
CCNYL2P
Other alias
HGNC (Hugo) CCNYL2
LocusID (NCBI) 414194
Atlas_Id 61598
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 42408174 and ends at 42472240 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCNYL2   23495
Cards
Entrez_Gene (NCBI)CCNYL2  414194  cyclin Y-like 2 (pseudogene)
AliasesC10orf21; CCNYL2P; bA178A10.2
GeneCards (Weizmann)CCNYL2
Ensembl hg19 (Hinxton)ENSG00000182632 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182632 [Gene_View]  chr10:42408174-42472240 [Contig_View]  CCNYL2 [Vega]
ICGC DataPortalENSG00000182632
TCGA cBioPortalCCNYL2
AceView (NCBI)CCNYL2
Genatlas (Paris)CCNYL2
WikiGenes414194
SOURCE (Princeton)CCNYL2
Genetics Home Reference (NIH)CCNYL2
Genomic and cartography
GoldenPath hg38 (UCSC)CCNYL2  -     chr10:42408174-42472240 -  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCNYL2  -     10q11.21   [Description]    (hg19-Feb_2009)
EnsemblCCNYL2 - 10q11.21 [CytoView hg19]  CCNYL2 - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBICCNYL2 [Mapview hg19]  CCNYL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039000
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCNYL2
Cluster EST : UnigeneHs.568048 [ NCBI ]
CGAP (NCI)Hs.568048
Alternative Splicing GalleryENSG00000182632
Gene ExpressionCCNYL2 [ NCBI-GEO ]   CCNYL2 [ EBI - ARRAY_EXPRESS ]   CCNYL2 [ SEEK ]   CCNYL2 [ MEM ]
Gene Expression Viewer (FireBrowse)CCNYL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414194
GTEX Portal (Tissue expression)CCNYL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T2Q4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T2Q4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T2Q4
Splice isoforms : SwissVarQ5T2Q4
PhosPhoSitePlusQ5T2Q4
Domains : Interpro (EBI)Cyclin-like    Cyclin_PHO80-like   
Domain families : Pfam (Sanger)Cyclin (PF08613)   
Domain families : Pfam (NCBI)pfam08613   
Domain families : Smart (EMBL)CYCLIN (SM00385)  
Conserved Domain (NCBI)CCNYL2
DMDM Disease mutations414194
Blocks (Seattle)CCNYL2
SuperfamilyQ5T2Q4
Human Protein AtlasENSG00000182632
Peptide AtlasQ5T2Q4
IPIIPI00914033   
Protein Interaction databases
DIP (DOE-UCLA)Q5T2Q4
IntAct (EBI)Q5T2Q4
FunCoupENSG00000182632
BioGRIDCCNYL2
STRING (EMBL)CCNYL2
ZODIACCCNYL2
Ontologies - Pathways
QuickGOQ5T2Q4
Ontology : AmiGOregulation of cyclin-dependent protein serine/threonine kinase activity  protein kinase binding  
Ontology : EGO-EBIregulation of cyclin-dependent protein serine/threonine kinase activity  protein kinase binding  
NDEx NetworkCCNYL2
Atlas of Cancer Signalling NetworkCCNYL2
Wikipedia pathwaysCCNYL2
Orthology - Evolution
OrthoDB414194
GeneTree (enSembl)ENSG00000182632
Phylogenetic Trees/Animal Genes : TreeFamCCNYL2
HOVERGENQ5T2Q4
HOGENOMQ5T2Q4
Homologs : HomoloGeneCCNYL2
Homology/Alignments : Family Browser (UCSC)CCNYL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNYL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNYL2
dbVarCCNYL2
ClinVarCCNYL2
1000_GenomesCCNYL2 
Exome Variant ServerCCNYL2
ExAC (Exome Aggregation Consortium)CCNYL2 (select the gene name)
Genetic variants : HAPMAP414194
Genomic Variants (DGV)CCNYL2 [DGVbeta]
DECIPHERCCNYL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCNYL2 
Mutations
ICGC Data PortalCCNYL2 
TCGA Data PortalCCNYL2 
Broad Tumor PortalCCNYL2
OASIS PortalCCNYL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCNYL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCNYL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCNYL2
DgiDB (Drug Gene Interaction Database)CCNYL2
DoCM (Curated mutations)CCNYL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCNYL2 (select a term)
intoGenCCNYL2
Cancer3DCCNYL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCNYL2
Genetic Testing Registry CCNYL2
NextProtQ5T2Q4 [Medical]
TSGene414194
GENETestsCCNYL2
Huge Navigator CCNYL2 [HugePedia]
snp3D : Map Gene to Disease414194
BioCentury BCIQCCNYL2
ClinGenCCNYL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414194
Chemical/Pharm GKB GenePA162382036
Clinical trialCCNYL2
Miscellaneous
canSAR (ICR)CCNYL2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCNYL2
EVEXCCNYL2
GoPubMedCCNYL2
iHOPCCNYL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:05:06 CEST 2017

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