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CCNYL2 (cyclin Y like 2 (pseudogene))

Identity

Alias (NCBI)C10orf21
CCNYL2P
bA178A10.2
HGNC (Hugo) CCNYL2
HGNC Alias symbbA178A10.2
CCNYL2P
HGNC Previous nameC10orf21
HGNC Previous namechromosome 10 open reading frame 21
 cyclin Y-like 2
LocusID (NCBI) 414194
Atlas_Id 61598
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 42408174 and ends at 42472240 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CCNYL2   23495
Cards
Entrez_Gene (NCBI)CCNYL2    cyclin Y like 2 (pseudogene)
AliasesC10orf21; CCNYL2P; bA178A10.2
GeneCards (Weizmann)CCNYL2
Ensembl hg19 (Hinxton)ENSG00000182632 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182632 [Gene_View]  ENSG00000182632 [Sequence]  chr10:42408174-42472240 [Contig_View]  CCNYL2 [Vega]
ICGC DataPortalENSG00000182632
TCGA cBioPortalCCNYL2
AceView (NCBI)CCNYL2
Genatlas (Paris)CCNYL2
SOURCE (Princeton)CCNYL2
Genetics Home Reference (NIH)CCNYL2
Genomic and cartography
GoldenPath hg38 (UCSC)CCNYL2  -     chr10:42408174-42472240 -  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCNYL2  -     10q11.21   [Description]    (hg19-Feb_2009)
GoldenPathCCNYL2 - 10q11.21 [CytoView hg19]  CCNYL2 - 10q11.21 [CytoView hg38]
ImmunoBaseENSG00000182632
Genome Data Viewer NCBICCNYL2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC039000
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)CCNYL2
Gene ExpressionCCNYL2 [ NCBI-GEO ]   CCNYL2 [ EBI - ARRAY_EXPRESS ]   CCNYL2 [ SEEK ]   CCNYL2 [ MEM ]
Gene Expression Viewer (FireBrowse)CCNYL2 [ Firebrowse - Broad ]
GenevisibleExpression of CCNYL2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414194
GTEX Portal (Tissue expression)CCNYL2
Human Protein AtlasENSG00000182632-CCNYL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T2Q4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T2Q4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T2Q4
PhosPhoSitePlusQ5T2Q4
Domains : Interpro (EBI)Cyclin-like    Cyclin-like_sf    Cyclin_PHO80-like    Cyclin_Y   
Domain families : Pfam (Sanger)Cyclin (PF08613)   
Domain families : Pfam (NCBI)pfam08613   
Domain families : Smart (EMBL)CYCLIN (SM00385)  
Conserved Domain (NCBI)CCNYL2
SuperfamilyQ5T2Q4
AlphaFold pdb e-kbQ5T2Q4   
Human Protein Atlas [tissue]ENSG00000182632-CCNYL2 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q5T2Q4
IntAct (EBI)Q5T2Q4
BioGRIDCCNYL2
STRING (EMBL)CCNYL2
ZODIACCCNYL2
Ontologies - Pathways
QuickGOQ5T2Q4
Ontology : AmiGOcytoplasm  plasma membrane  cyclin-dependent protein serine/threonine kinase regulator activity  protein kinase binding  positive regulation of cyclin-dependent protein serine/threonine kinase activity  
Ontology : EGO-EBIcytoplasm  plasma membrane  cyclin-dependent protein serine/threonine kinase regulator activity  protein kinase binding  positive regulation of cyclin-dependent protein serine/threonine kinase activity  
NDEx NetworkCCNYL2
Atlas of Cancer Signalling NetworkCCNYL2
Wikipedia pathwaysCCNYL2
Orthology - Evolution
OrthoDB414194
GeneTree (enSembl)ENSG00000182632
Phylogenetic Trees/Animal Genes : TreeFamCCNYL2
Homologs : HomoloGeneCCNYL2
Homology/Alignments : Family Browser (UCSC)CCNYL2
Gene fusions - Rearrangements
Fusion : QuiverCCNYL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCNYL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCNYL2
dbVarCCNYL2
ClinVarCCNYL2
MonarchCCNYL2
1000_GenomesCCNYL2 
Exome Variant ServerCCNYL2
GNOMAD BrowserENSG00000182632
Varsome BrowserCCNYL2
ACMGCCNYL2 variants
VarityQ5T2Q4
Genomic Variants (DGV)CCNYL2 [DGVbeta]
DECIPHERCCNYL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCNYL2 
Mutations
ICGC Data PortalCCNYL2 
TCGA Data PortalCCNYL2 
Broad Tumor PortalCCNYL2
OASIS PortalCCNYL2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCNYL2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCNYL2
DgiDB (Drug Gene Interaction Database)CCNYL2
DoCM (Curated mutations)CCNYL2
CIViC (Clinical Interpretations of Variants in Cancer)CCNYL2
Cancer3DCCNYL2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCNYL2
MedgenCCNYL2
Genetic Testing Registry CCNYL2
NextProtQ5T2Q4 [Medical]
GENETestsCCNYL2
Target ValidationCCNYL2
Huge Navigator CCNYL2 [HugePedia]
ClinGenCCNYL2
Clinical trials, drugs, therapy
MyCancerGenomeCCNYL2
Protein Interactions : CTDCCNYL2
Pharm GKB GenePA162382036
PharosQ5T2Q4
Clinical trialCCNYL2
Miscellaneous
canSAR (ICR)CCNYL2
HarmonizomeCCNYL2
DataMed IndexCCNYL2
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCNYL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:45:25 CEST 2021

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