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CCP110 (centriolar coiled-coil protein 110kDa)

Identity

Alias_namescentriolar coiled coil protein 110kDa
Alias_symbol (synonym)KIAA0419
CP110
Other aliasCep110
HGNC (Hugo) CCP110
LocusID (NCBI) 9738
Atlas_Id 54205
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 19535179 and ends at 19564728 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCP110 (16p12.3) / GOLPH3L (1q21.3)CCP110 (16p12.3) / PTMS (12p13.31)TMC5 (16p12.3) / CCP110 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)CCP110   24342
Cards
Entrez_Gene (NCBI)CCP110  9738  centriolar coiled-coil protein 110kDa
AliasesCP110; Cep110
GeneCards (Weizmann)CCP110
Ensembl hg19 (Hinxton)ENSG00000103540 [Gene_View]  chr16:19535179-19564728 [Contig_View]  CCP110 [Vega]
Ensembl hg38 (Hinxton)ENSG00000103540 [Gene_View]  chr16:19535179-19564728 [Contig_View]  CCP110 [Vega]
ICGC DataPortalENSG00000103540
TCGA cBioPortalCCP110
AceView (NCBI)CCP110
Genatlas (Paris)CCP110
WikiGenes9738
SOURCE (Princeton)CCP110
Genetics Home Reference (NIH)CCP110
Genomic and cartography
GoldenPath hg19 (UCSC)CCP110  -     chr16:19535179-19564728 +  16p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCP110  -     16p12.3   [Description]    (hg38-Dec_2013)
EnsemblCCP110 - 16p12.3 [CytoView hg19]  CCP110 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBICCP110 [Mapview hg19]  CCP110 [Mapview hg38]
OMIM609544   
Gene and transcription
Genbank (Entrez)AB007879 AK300426 AK309196 BC030223 BC034140
RefSeq transcript (Entrez)NM_001199022 NM_014711
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)CCP110
Cluster EST : UnigeneHs.279912 [ NCBI ]
CGAP (NCI)Hs.279912
Alternative Splicing GalleryENSG00000103540
Gene ExpressionCCP110 [ NCBI-GEO ]   CCP110 [ EBI - ARRAY_EXPRESS ]   CCP110 [ SEEK ]   CCP110 [ MEM ]
Gene Expression Viewer (FireBrowse)CCP110 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9738
GTEX Portal (Tissue expression)CCP110
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43303   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43303  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43303
Splice isoforms : SwissVarO43303
PhosPhoSitePlusO43303
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCP110
DMDM Disease mutations9738
Blocks (Seattle)CCP110
SuperfamilyO43303
Human Protein AtlasENSG00000103540
Peptide AtlasO43303
HPRD10848
IPIIPI00011933   IPI00478736   
Protein Interaction databases
DIP (DOE-UCLA)O43303
IntAct (EBI)O43303
FunCoupENSG00000103540
BioGRIDCCP110
STRING (EMBL)CCP110
ZODIACCCP110
Ontologies - Pathways
QuickGOO43303
Ontology : AmiGOG2/M transition of mitotic cell cycle  protein binding  centrosome  centriole  cytosol  cilium  centriole replication  cell projection organization  regulation of cytokinesis  protein complex  centrosome duplication  centrosome duplication  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  protein binding  centrosome  centriole  cytosol  cilium  centriole replication  cell projection organization  regulation of cytokinesis  protein complex  centrosome duplication  centrosome duplication  
NDEx NetworkCCP110
Atlas of Cancer Signalling NetworkCCP110
Wikipedia pathwaysCCP110
Orthology - Evolution
OrthoDB9738
GeneTree (enSembl)ENSG00000103540
Phylogenetic Trees/Animal Genes : TreeFamCCP110
HOVERGENO43303
HOGENOMO43303
Homologs : HomoloGeneCCP110
Homology/Alignments : Family Browser (UCSC)CCP110
Gene fusions - Rearrangements
Fusion : MitelmanCCP110/GOLPH3L [16p12.3/1q21.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCP110 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCP110
dbVarCCP110
ClinVarCCP110
1000_GenomesCCP110 
Exome Variant ServerCCP110
ExAC (Exome Aggregation Consortium)CCP110 (select the gene name)
Genetic variants : HAPMAP9738
Genomic Variants (DGV)CCP110 [DGVbeta]
DECIPHER (Syndromes)16:19535179-19564728  ENSG00000103540
CONAN: Copy Number AnalysisCCP110 
Mutations
ICGC Data PortalCCP110 
TCGA Data PortalCCP110 
Broad Tumor PortalCCP110
OASIS PortalCCP110 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCP110  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCP110
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCP110
DgiDB (Drug Gene Interaction Database)CCP110
DoCM (Curated mutations)CCP110 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCP110 (select a term)
intoGenCCP110
Cancer3DCCP110(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609544   
Orphanet
MedgenCCP110
Genetic Testing Registry CCP110
NextProtO43303 [Medical]
TSGene9738
GENETestsCCP110
Huge Navigator CCP110 [HugePedia]
snp3D : Map Gene to Disease9738
BioCentury BCIQCCP110
ClinGenCCP110
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9738
Clinical trialCCP110
Miscellaneous
canSAR (ICR)CCP110 (select the gene name)
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCP110
EVEXCCP110
GoPubMedCCP110
iHOPCCP110
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:59:14 CET 2017

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