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CCR6 (chemokine (C-C motif) receptor 6)

Identity

Other namesBN-1
C-C CKR-6
CC-CKR-6
CCR-6
CD196
CKR-L3
CKRL3
CMKBR6
DCR2
DRY6
GPR29
GPRCY4
STRL22
HGNC (Hugo) CCR6
LocusID (NCBI) 1235
Location 6q27
Location_base_pair Starts at 167525295 and ends at 167552629 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CCR6   1607
Entrez_Gene (NCBI)CCR6  1235  chemokine (C-C motif) receptor 6
Cards
GeneCards (Weizmann)CCR6
Ensembl (Hinxton)ENSG00000112486 [Gene_View]  chr6:167525295-167552629 [Contig_View]  CCR6 [Vega]
AceView (NCBI)CCR6
Genatlas (Paris)CCR6
SOURCE (Stanford)NM_004367 NM_031409
Genomic and cartography
GoldenPath (UCSC)CCR6  -  6q27   chr6:167525295-167552629 +  6q27   [Description]    (hg19-Feb_2009)
EnsemblCCR6 - 6q27 [CytoView]
Mapping of homologs : NCBICCR6 [Mapview]
OMIM601835   
Gene and transcription
Genbank (Entrez)AK223494 AK293015 AY242126 BC037960 CD692892
RefSeq transcript (SRS)NM_004367 NM_031409
RefSeq transcript (Entrez)NM_004367 NM_031409
RefSeq genomic (SRS)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838993 NW_004078028
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838993 NW_004078028
Consensus coding sequences : CCDS (NCBI)CCR6
Cluster EST : UnigeneHs.46468 [ SRS ] Hs.46468 [ NCBI ]
CGAP (NCI)Hs.46468
Alternative Splicing : Fast-db (Paris)GSHG0034023
Alternative Splicing GalleryENSG00000112486
Gene ExpressionCCR6 [ NCBI-GEO ]   CCR6 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51684 (SRS) P51684 (Uniprot)
NextProtP51684
With graphics : InterProP51684
Splice isoforms : SwissVarP51684(Swissvar)
Domaine pattern : Prosite (SRS)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (SRS)Chemokine_CCR6    Chemokine_rcpt    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domains : Interpro (EBI)Chemokine_CCR6    Chemokine_rcpt    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Related proteins : CluSTrP51684
Domain families : Pfam (SRS)7tm_1 (PF00001)   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM1235
Blocks (Seattle)P51684
Human Protein AtlasENSG00000112486
HPRD03498
IPIIPI00293730   
Protein Interaction databases
DIP (DOE-UCLA)P51684
IntAct (EBI)P51684
FunCoupENSG00000112486
REACTOMECCR6
Protein Interaction Database1235
BioGRIDCCR6
InParanoidP51684
Interologous Interaction database P51684
IntegromeDBCCR6
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CCR6
SNP (GeneSNP Utah)CCR6
SNP : HGBaseCCR6
Genetic variants : HAPMAPCCR6
Somatic Mutations in Cancer : COSMICCCR6 
CONAN: Copy Number AnalysisCCR6 
Mutations and Diseases : HGMDCCR6
OMIM601835   
GENETests601835   
Disease Genetic AssociationCCR6
Huge Navigator CCR6 [HugePedia]  CCR6 [HugeCancerGEM]
Genomic VariantsCCR6  CCR6 [DGVbeta]
ClinVarCCR6
snp3D : Map Gene to Disease1235
General knowledge
Homologs : HomoloGeneCCR6
Homology/Alignments : Family Browser (UCSC)CCR6
Phylogenetic Trees/Animal Genes : TreeFamCCR6
Chemical/Protein Interactions : CTD1235
Chemical/Pharm GKB GenePA26171
Clinical trialCCR6
Cancer Resource (Charite)ENSG00000112486
Ontology : AmiGOdendritic cell chemotaxis  receptor activity  chemokine receptor activity  plasma membrane  integral to plasma membrane  cellular component movement  chemotaxis  immune response  humoral immune response  cellular defense response  signal transduction  elevation of cytosolic calcium ion concentration  C-C chemokine receptor activity  C-C chemokine binding  negative regulation of cAMP biosynthetic process  innate immune response  chemokine-mediated signaling pathway  
Ontology : EGO-EBIdendritic cell chemotaxis  receptor activity  chemokine receptor activity  plasma membrane  integral to plasma membrane  cellular component movement  chemotaxis  immune response  humoral immune response  cellular defense response  signal transduction  elevation of cytosolic calcium ion concentration  C-C chemokine receptor activity  C-C chemokine binding  negative regulation of cAMP biosynthetic process  innate immune response  chemokine-mediated signaling pathway  
Pathways : KEGGCytokine-cytokine receptor interaction
Other databases
Probes
Litterature
PubMed102 Pubmed reference(s) in Entrez
PubGeneCCR6
iHOPCCR6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:45:43 CEST 2013
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