Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCRL2 (C-C motif chemokine receptor like 2)

Identity

Alias_nameschemokine (C-C motif) receptor-like 2
Alias_symbol (synonym)HCR
CRAM-B
CKRX
CRAM-A
ACKR5
Other aliasCRAM
HGNC (Hugo) CCRL2
LocusID (NCBI) 9034
Atlas_Id 53961
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 46407558 and ends at 46409523 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCRL2   1612
Cards
Entrez_Gene (NCBI)CCRL2  9034  C-C motif chemokine receptor like 2
AliasesACKR5; CKRX; CRAM; CRAM-A; 
CRAM-B; HCR
GeneCards (Weizmann)CCRL2
Ensembl hg19 (Hinxton)ENSG00000121797 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121797 [Gene_View]  chr3:46407558-46409523 [Contig_View]  CCRL2 [Vega]
ICGC DataPortalENSG00000121797
TCGA cBioPortalCCRL2
AceView (NCBI)CCRL2
Genatlas (Paris)CCRL2
WikiGenes9034
SOURCE (Princeton)CCRL2
Genetics Home Reference (NIH)CCRL2
Genomic and cartography
GoldenPath hg38 (UCSC)CCRL2  -     chr3:46407558-46409523 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCRL2  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblCCRL2 - 3p21.31 [CytoView hg19]  CCRL2 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBICCRL2 [Mapview hg19]  CCRL2 [Mapview hg38]
OMIM608379   
Gene and transcription
Genbank (Entrez)AF015524 AF015525 AJ344142 AK296673 AK313312
RefSeq transcript (Entrez)NM_001130910 NM_003965
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCRL2
Cluster EST : UnigeneHs.535713 [ NCBI ]
CGAP (NCI)Hs.535713
Alternative Splicing GalleryENSG00000121797
Gene ExpressionCCRL2 [ NCBI-GEO ]   CCRL2 [ EBI - ARRAY_EXPRESS ]   CCRL2 [ SEEK ]   CCRL2 [ MEM ]
Gene Expression Viewer (FireBrowse)CCRL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9034
GTEX Portal (Tissue expression)CCRL2
Human Protein AtlasENSG00000121797-CCRL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00421   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00421  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00421
Splice isoforms : SwissVarO00421
PhosPhoSitePlusO00421
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)Chemokine_rcpt    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)CCRL2
DMDM Disease mutations9034
Blocks (Seattle)CCRL2
SuperfamilyO00421
Human Protein Atlas [tissue]ENSG00000121797-CCRL2 [tissue]
Peptide AtlasO00421
HPRD16327
IPIIPI00759535   IPI00018247   IPI00925178   
Protein Interaction databases
DIP (DOE-UCLA)O00421
IntAct (EBI)O00421
FunCoupENSG00000121797
BioGRIDCCRL2
STRING (EMBL)CCRL2
ZODIACCCRL2
Ontologies - Pathways
QuickGOO00421
Ontology : AmiGOchemokine receptor activity  plasma membrane  integral component of plasma membrane  chemotaxis  inflammatory response  G-protein coupled receptor signaling pathway  chemokine receptor binding  CCR chemokine receptor binding  chemokine-mediated signaling pathway  
Ontology : EGO-EBIchemokine receptor activity  plasma membrane  integral component of plasma membrane  chemotaxis  inflammatory response  G-protein coupled receptor signaling pathway  chemokine receptor binding  CCR chemokine receptor binding  chemokine-mediated signaling pathway  
NDEx NetworkCCRL2
Atlas of Cancer Signalling NetworkCCRL2
Wikipedia pathwaysCCRL2
Orthology - Evolution
OrthoDB9034
GeneTree (enSembl)ENSG00000121797
Phylogenetic Trees/Animal Genes : TreeFamCCRL2
HOVERGENO00421
HOGENOMO00421
Homologs : HomoloGeneCCRL2
Homology/Alignments : Family Browser (UCSC)CCRL2
Gene fusions - Rearrangements
Tumor Fusion PortalCCRL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCRL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCRL2
dbVarCCRL2
ClinVarCCRL2
1000_GenomesCCRL2 
Exome Variant ServerCCRL2
ExAC (Exome Aggregation Consortium)ENSG00000121797
GNOMAD BrowserENSG00000121797
Genetic variants : HAPMAP9034
Genomic Variants (DGV)CCRL2 [DGVbeta]
DECIPHERCCRL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCRL2 
Mutations
ICGC Data PortalCCRL2 
TCGA Data PortalCCRL2 
Broad Tumor PortalCCRL2
OASIS PortalCCRL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCRL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCRL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCRL2
DgiDB (Drug Gene Interaction Database)CCRL2
DoCM (Curated mutations)CCRL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCRL2 (select a term)
intoGenCCRL2
Cancer3DCCRL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608379   
Orphanet
DisGeNETCCRL2
MedgenCCRL2
Genetic Testing Registry CCRL2
NextProtO00421 [Medical]
TSGene9034
GENETestsCCRL2
Target ValidationCCRL2
Huge Navigator CCRL2 [HugePedia]
snp3D : Map Gene to Disease9034
BioCentury BCIQCCRL2
ClinGenCCRL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9034
Chemical/Pharm GKB GenePA26175
Clinical trialCCRL2
Miscellaneous
canSAR (ICR)CCRL2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCRL2
EVEXCCRL2
GoPubMedCCRL2
iHOPCCRL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:06:35 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.