Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCSAP (centriole, cilia and spindle-associated protein)

Identity

Alias_namesC1orf96
chromosome 1 open reading frame 96
centriole, cilia and spindle-associated protein
Alias_symbol (synonym)FLJ41471
CSAP
Other alias
HGNC (Hugo) CCSAP
LocusID (NCBI) 126731
Atlas_Id 61599
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 229456752 and ends at 229478688 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SLAMF7 (1q23.3) / CCSAP (1q42.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCSAP   29578
Cards
Entrez_Gene (NCBI)CCSAP  126731  centriole, cilia and spindle-associated protein
AliasesC1orf96; CSAP
GeneCards (Weizmann)CCSAP
Ensembl hg19 (Hinxton)ENSG00000154429 [Gene_View]  chr1:229456752-229478688 [Contig_View]  CCSAP [Vega]
Ensembl hg38 (Hinxton)ENSG00000154429 [Gene_View]  chr1:229456752-229478688 [Contig_View]  CCSAP [Vega]
ICGC DataPortalENSG00000154429
TCGA cBioPortalCCSAP
AceView (NCBI)CCSAP
Genatlas (Paris)CCSAP
WikiGenes126731
SOURCE (Princeton)CCSAP
Genetics Home Reference (NIH)CCSAP
Genomic and cartography
GoldenPath hg19 (UCSC)CCSAP  -     chr1:229456752-229478688 -  1q42.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCSAP  -     1q42.13   [Description]    (hg38-Dec_2013)
EnsemblCCSAP - 1q42.13 [CytoView hg19]  CCSAP - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBICCSAP [Mapview hg19]  CCSAP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094615 AK123465 AK291437 BC015419 BC039241
RefSeq transcript (Entrez)NM_145257
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)CCSAP
Cluster EST : UnigeneHs.585011 [ NCBI ]
CGAP (NCI)Hs.585011
Alternative Splicing GalleryENSG00000154429
Gene ExpressionCCSAP [ NCBI-GEO ]   CCSAP [ EBI - ARRAY_EXPRESS ]   CCSAP [ SEEK ]   CCSAP [ MEM ]
Gene Expression Viewer (FireBrowse)CCSAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126731
GTEX Portal (Tissue expression)CCSAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IQ19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IQ19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IQ19
Splice isoforms : SwissVarQ6IQ19
PhosPhoSitePlusQ6IQ19
Domains : Interpro (EBI)CSAP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCSAP
DMDM Disease mutations126731
Blocks (Seattle)CCSAP
SuperfamilyQ6IQ19
Human Protein AtlasENSG00000154429
Peptide AtlasQ6IQ19
HPRD14035
IPIIPI00060024   IPI00646584   IPI00844155   IPI00843982   
Protein Interaction databases
DIP (DOE-UCLA)Q6IQ19
IntAct (EBI)Q6IQ19
FunCoupENSG00000154429
BioGRIDCCSAP
STRING (EMBL)CCSAP
ZODIACCCSAP
Ontologies - Pathways
QuickGOQ6IQ19
Ontology : AmiGOcentrosome  centriole  spindle  cilium  axoneme  multicellular organismal development  axon  ciliary transition zone  ciliary basal body  regulation of embryonic development  regulation of cilium beat frequency involved in ciliary motility  
Ontology : EGO-EBIcentrosome  centriole  spindle  cilium  axoneme  multicellular organismal development  axon  ciliary transition zone  ciliary basal body  regulation of embryonic development  regulation of cilium beat frequency involved in ciliary motility  
NDEx NetworkCCSAP
Atlas of Cancer Signalling NetworkCCSAP
Wikipedia pathwaysCCSAP
Orthology - Evolution
OrthoDB126731
GeneTree (enSembl)ENSG00000154429
Phylogenetic Trees/Animal Genes : TreeFamCCSAP
HOVERGENQ6IQ19
HOGENOMQ6IQ19
Homologs : HomoloGeneCCSAP
Homology/Alignments : Family Browser (UCSC)CCSAP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCSAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCSAP
dbVarCCSAP
ClinVarCCSAP
1000_GenomesCCSAP 
Exome Variant ServerCCSAP
ExAC (Exome Aggregation Consortium)CCSAP (select the gene name)
Genetic variants : HAPMAP126731
Genomic Variants (DGV)CCSAP [DGVbeta]
DECIPHER (Syndromes)1:229456752-229478688  ENSG00000154429
CONAN: Copy Number AnalysisCCSAP 
Mutations
ICGC Data PortalCCSAP 
TCGA Data PortalCCSAP 
Broad Tumor PortalCCSAP
OASIS PortalCCSAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCSAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCSAP
BioMutasearch CCSAP
DgiDB (Drug Gene Interaction Database)CCSAP
DoCM (Curated mutations)CCSAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCSAP (select a term)
intoGenCCSAP
Cancer3DCCSAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCSAP
Genetic Testing Registry CCSAP
NextProtQ6IQ19 [Medical]
TSGene126731
GENETestsCCSAP
Huge Navigator CCSAP [HugePedia]
snp3D : Map Gene to Disease126731
BioCentury BCIQCCSAP
ClinGenCCSAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126731
Chemical/Pharm GKB GenePA142672480
Clinical trialCCSAP
Miscellaneous
canSAR (ICR)CCSAP (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCSAP
EVEXCCSAP
GoPubMedCCSAP
iHOPCCSAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:58:46 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.