Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CCSER1 (coiled-coil serine rich protein 1)

Identity

Alias (NCBI)FAM190A
HGNC (Hugo) CCSER1
HGNC Alias symbKIAA1680
HGNC Previous nameFAM190A
HGNC Previous namefamily with sequence similarity 190, member A
 coiled-coil serine-rich protein 1
LocusID (NCBI) 401145
Atlas_Id 53543
Location 4q22.1  [Link to chromosome band 4q22]
Location_base_pair Starts at 90235031 and ends at 90782003 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCSER1 (4q22.1) / C5orf34 (5p12)CCSER1 (4q22.1) / MMRN1 (4q22.1)CCSER1 (4q22.1) / UGT2A1 (4q13.2)
CENPK (5q12.3) / CCSER1 (4q22.1)CENPP (9q22.31) / CCSER1 (4q22.1)DENND1B (1q31.3) / CCSER1 (4q22.1)
FRAS1 (4q21.21) / CCSER1 (4q22.1)MAPK10 (4q21.3) / CCSER1 (4q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)CCSER1   29349
Cards
Entrez_Gene (NCBI)CCSER1    coiled-coil serine rich protein 1
AliasesFAM190A
GeneCards (Weizmann)CCSER1
Ensembl hg19 (Hinxton)ENSG00000184305 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184305 [Gene_View]  ENSG00000184305 [Sequence]  chr4:90235031-90782003 [Contig_View]  CCSER1 [Vega]
ICGC DataPortalENSG00000184305
TCGA cBioPortalCCSER1
AceView (NCBI)CCSER1
Genatlas (Paris)CCSER1
SOURCE (Princeton)CCSER1
Genetics Home Reference (NIH)CCSER1
Genomic and cartography
GoldenPath hg38 (UCSC)CCSER1  -     chr4:90235031-90782003 +  4q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCSER1  -     4q22.1   [Description]    (hg19-Feb_2009)
GoldenPathCCSER1 - 4q22.1 [CytoView hg19]  CCSER1 - 4q22.1 [CytoView hg38]
ImmunoBaseENSG00000184305
Genome Data Viewer NCBICCSER1 [Mapview hg19]  
OMIM618934   
Gene and transcription
Genbank (Entrez)AB051467 AK097436 AK310825 BC021681 BC051694
RefSeq transcript (Entrez)NM_001145065 NM_001377987 NM_207491
Consensus coding sequences : CCDS (NCBI)CCSER1
Gene ExpressionCCSER1 [ NCBI-GEO ]   CCSER1 [ EBI - ARRAY_EXPRESS ]   CCSER1 [ SEEK ]   CCSER1 [ MEM ]
Gene Expression Viewer (FireBrowse)CCSER1 [ Firebrowse - Broad ]
GenevisibleExpression of CCSER1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401145
GTEX Portal (Tissue expression)CCSER1
Human Protein AtlasENSG00000184305-CCSER1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0I3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0I3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0I3
PhosPhoSitePlusQ9C0I3
Domains : Interpro (EBI)CCSER    CCSER1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCSER1
SuperfamilyQ9C0I3
AlphaFold pdb e-kbQ9C0I3   
Human Protein Atlas [tissue]ENSG00000184305-CCSER1 [tissue]
HPRD17561
Protein Interaction databases
DIP (DOE-UCLA)Q9C0I3
IntAct (EBI)Q9C0I3
BioGRIDCCSER1
STRING (EMBL)CCSER1
ZODIACCCSER1
Ontologies - Pathways
QuickGOQ9C0I3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCSER1
Atlas of Cancer Signalling NetworkCCSER1
Wikipedia pathwaysCCSER1
Orthology - Evolution
OrthoDB401145
GeneTree (enSembl)ENSG00000184305
Phylogenetic Trees/Animal Genes : TreeFamCCSER1
Homologs : HomoloGeneCCSER1
Homology/Alignments : Family Browser (UCSC)CCSER1
Gene fusions - Rearrangements
Fusion : MitelmanCCSER1/MMRN1 [4q22.1/4q22.1]  
Fusion : MitelmanCCSER1/UGT2A1 [4q22.1/4q13.2]  
Fusion : MitelmanDENND1B/CCSER1 [1q31.3/4q22.1]  
Fusion : MitelmanFRAS1/CCSER1 [4q21.21/4q22.1]  
Fusion : MitelmanMAPK10/CCSER1 [4q21.3/4q22.1]  
Fusion : QuiverCCSER1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCSER1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCSER1
dbVarCCSER1
ClinVarCCSER1
MonarchCCSER1
1000_GenomesCCSER1 
Exome Variant ServerCCSER1
GNOMAD BrowserENSG00000184305
Varsome BrowserCCSER1
ACMGCCSER1 variants
VarityQ9C0I3
Genomic Variants (DGV)CCSER1 [DGVbeta]
DECIPHERCCSER1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCSER1 
Mutations
ICGC Data PortalCCSER1 
TCGA Data PortalCCSER1 
Broad Tumor PortalCCSER1
OASIS PortalCCSER1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCSER1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCSER1
Mutations and Diseases : HGMDCCSER1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCSER1
DgiDB (Drug Gene Interaction Database)CCSER1
DoCM (Curated mutations)CCSER1
CIViC (Clinical Interpretations of Variants in Cancer)CCSER1
Cancer3DCCSER1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618934   
Orphanet
DisGeNETCCSER1
MedgenCCSER1
Genetic Testing Registry CCSER1
NextProtQ9C0I3 [Medical]
GENETestsCCSER1
Target ValidationCCSER1
Huge Navigator CCSER1 [HugePedia]
ClinGenCCSER1
Clinical trials, drugs, therapy
MyCancerGenomeCCSER1
Protein Interactions : CTDCCSER1
Pharm GKB GenePA165663936
PharosQ9C0I3
Clinical trialCCSER1
Miscellaneous
canSAR (ICR)CCSER1
HarmonizomeCCSER1
DataMed IndexCCSER1
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCSER1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:02:51 CEST 2021
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