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CCSER2 (coiled-coil serine rich protein 2)

Identity

Alias (NCBI)FAM190B
Gcap14
KIAA1128
bA486O22.1
HGNC (Hugo) CCSER2
HGNC Previous nameKIAA1128
 FAM190B
HGNC Previous nameKIAA1128
 family with sequence similarity 190, member B
 coiled-coil serine-rich protein 2
LocusID (NCBI) 54462
Atlas_Id 54206
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84328589 and ends at 84518515 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCSER2 (10q23.1) / CYP2C19 (10q23.33)OBFC1 (10q24.33) / CCSER2 (10q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CCSER2   29197
Cards
Entrez_Gene (NCBI)CCSER2    coiled-coil serine rich protein 2
AliasesFAM190B; Gcap14; KIAA1128; bA486O22.1
GeneCards (Weizmann)CCSER2
Ensembl hg19 (Hinxton)ENSG00000107771 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107771 [Gene_View]  ENSG00000107771 [Sequence]  chr10:84328589-84518515 [Contig_View]  CCSER2 [Vega]
ICGC DataPortalENSG00000107771
TCGA cBioPortalCCSER2
AceView (NCBI)CCSER2
Genatlas (Paris)CCSER2
SOURCE (Princeton)CCSER2
Genetics Home Reference (NIH)CCSER2
Genomic and cartography
GoldenPath hg38 (UCSC)CCSER2  -     chr10:84328589-84518515 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCSER2  -     10q23.1   [Description]    (hg19-Feb_2009)
GoldenPathCCSER2 - 10q23.1 [CytoView hg19]  CCSER2 - 10q23.1 [CytoView hg38]
ImmunoBaseENSG00000107771
Genome Data Viewer NCBICCSER2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB032954 AF241785 AI001725 AK024324 AK098675
RefSeq transcript (Entrez)NM_001284240 NM_001284241 NM_001284242 NM_001284243 NM_001351290 NM_001351292 NM_018999
Consensus coding sequences : CCDS (NCBI)CCSER2
Gene ExpressionCCSER2 [ NCBI-GEO ]   CCSER2 [ EBI - ARRAY_EXPRESS ]   CCSER2 [ SEEK ]   CCSER2 [ MEM ]
Gene Expression Viewer (FireBrowse)CCSER2 [ Firebrowse - Broad ]
GenevisibleExpression of CCSER2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54462
GTEX Portal (Tissue expression)CCSER2
Human Protein AtlasENSG00000107771-CCSER2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7U1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7U1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7U1
PhosPhoSitePlusQ9H7U1
Domains : Interpro (EBI)CCSER    CCSER2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCSER2
SuperfamilyQ9H7U1
AlphaFold pdb e-kbQ9H7U1   
Human Protein Atlas [tissue]ENSG00000107771-CCSER2 [tissue]
HPRD13832
Protein Interaction databases
DIP (DOE-UCLA)Q9H7U1
IntAct (EBI)Q9H7U1
BioGRIDCCSER2
STRING (EMBL)CCSER2
ZODIACCCSER2
Ontologies - Pathways
QuickGOQ9H7U1
Ontology : AmiGOmicrotubule bundle formation  cytoplasm  microtubule binding  microtubule cytoskeleton  
Ontology : EGO-EBImicrotubule bundle formation  cytoplasm  microtubule binding  microtubule cytoskeleton  
NDEx NetworkCCSER2
Atlas of Cancer Signalling NetworkCCSER2
Wikipedia pathwaysCCSER2
Orthology - Evolution
OrthoDB54462
GeneTree (enSembl)ENSG00000107771
Phylogenetic Trees/Animal Genes : TreeFamCCSER2
Homologs : HomoloGeneCCSER2
Homology/Alignments : Family Browser (UCSC)CCSER2
Gene fusions - Rearrangements
Fusion : MitelmanCCSER2/CYP2C19 [10q23.1/10q23.33]  
Fusion : QuiverCCSER2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCSER2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCSER2
dbVarCCSER2
ClinVarCCSER2
MonarchCCSER2
1000_GenomesCCSER2 
Exome Variant ServerCCSER2
GNOMAD BrowserENSG00000107771
Varsome BrowserCCSER2
ACMGCCSER2 variants
VarityQ9H7U1
Genomic Variants (DGV)CCSER2 [DGVbeta]
DECIPHERCCSER2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCSER2 
Mutations
ICGC Data PortalCCSER2 
TCGA Data PortalCCSER2 
Broad Tumor PortalCCSER2
OASIS PortalCCSER2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCSER2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCSER2
Mutations and Diseases : HGMDCCSER2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCSER2
DgiDB (Drug Gene Interaction Database)CCSER2
DoCM (Curated mutations)CCSER2
CIViC (Clinical Interpretations of Variants in Cancer)CCSER2
Cancer3DCCSER2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCSER2
MedgenCCSER2
Genetic Testing Registry CCSER2
NextProtQ9H7U1 [Medical]
GENETestsCCSER2
Target ValidationCCSER2
Huge Navigator CCSER2 [HugePedia]
ClinGenCCSER2
Clinical trials, drugs, therapy
MyCancerGenomeCCSER2
Protein Interactions : CTDCCSER2
Pharm GKB GenePA165548597
PharosQ9H7U1
Clinical trialCCSER2
Miscellaneous
canSAR (ICR)CCSER2
HarmonizomeCCSER2
DataMed IndexCCSER2
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCSER2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:02:51 CEST 2021

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