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CCSER2 (coiled-coil serine rich protein 2)

Identity

Alias_namesKIAA1128
FAM190B
KIAA1128
family with sequence similarity 190, member B
coiled-coil serine-rich protein 2
Other aliasGcap14
bA486O22.1
HGNC (Hugo) CCSER2
LocusID (NCBI) 54462
Atlas_Id 54206
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84328589 and ends at 84518521 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCSER2 (10q23.1) / CYP2C19 (10q23.33)OBFC1 (10q24.33) / CCSER2 (10q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCSER2   29197
Cards
Entrez_Gene (NCBI)CCSER2  54462  coiled-coil serine rich protein 2
AliasesFAM190B; Gcap14; KIAA1128; bA486O22.1
GeneCards (Weizmann)CCSER2
Ensembl hg19 (Hinxton)ENSG00000107771 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107771 [Gene_View]  chr10:84328589-84518521 [Contig_View]  CCSER2 [Vega]
ICGC DataPortalENSG00000107771
TCGA cBioPortalCCSER2
AceView (NCBI)CCSER2
Genatlas (Paris)CCSER2
WikiGenes54462
SOURCE (Princeton)CCSER2
Genetics Home Reference (NIH)CCSER2
Genomic and cartography
GoldenPath hg38 (UCSC)CCSER2  -     chr10:84328589-84518521 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCSER2  -     10q23.1   [Description]    (hg19-Feb_2009)
EnsemblCCSER2 - 10q23.1 [CytoView hg19]  CCSER2 - 10q23.1 [CytoView hg38]
Mapping of homologs : NCBICCSER2 [Mapview hg19]  CCSER2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB032954 AF241785 AI001725 AK024324 AK098675
RefSeq transcript (Entrez)NM_001284240 NM_001284241 NM_001284242 NM_001284243 NM_018999
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCSER2
Cluster EST : UnigeneHs.461988 [ NCBI ]
CGAP (NCI)Hs.461988
Alternative Splicing GalleryENSG00000107771
Gene ExpressionCCSER2 [ NCBI-GEO ]   CCSER2 [ EBI - ARRAY_EXPRESS ]   CCSER2 [ SEEK ]   CCSER2 [ MEM ]
Gene Expression Viewer (FireBrowse)CCSER2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54462
GTEX Portal (Tissue expression)CCSER2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7U1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7U1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7U1
Splice isoforms : SwissVarQ9H7U1
PhosPhoSitePlusQ9H7U1
Domains : Interpro (EBI)CCSER    CCSER2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCSER2
DMDM Disease mutations54462
Blocks (Seattle)CCSER2
SuperfamilyQ9H7U1
Human Protein AtlasENSG00000107771
Peptide AtlasQ9H7U1
HPRD13832
IPIIPI00146077   IPI00166997   IPI00423392   IPI01015523   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7U1
IntAct (EBI)Q9H7U1
FunCoupENSG00000107771
BioGRIDCCSER2
STRING (EMBL)CCSER2
ZODIACCCSER2
Ontologies - Pathways
QuickGOQ9H7U1
Ontology : AmiGOmicrotubule bundle formation  microtubule binding  microtubule cytoskeleton  
Ontology : EGO-EBImicrotubule bundle formation  microtubule binding  microtubule cytoskeleton  
NDEx NetworkCCSER2
Atlas of Cancer Signalling NetworkCCSER2
Wikipedia pathwaysCCSER2
Orthology - Evolution
OrthoDB54462
GeneTree (enSembl)ENSG00000107771
Phylogenetic Trees/Animal Genes : TreeFamCCSER2
HOVERGENQ9H7U1
HOGENOMQ9H7U1
Homologs : HomoloGeneCCSER2
Homology/Alignments : Family Browser (UCSC)CCSER2
Gene fusions - Rearrangements
Fusion : MitelmanCCSER2/CYP2C19 [10q23.1/10q23.33]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCSER2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCSER2
dbVarCCSER2
ClinVarCCSER2
1000_GenomesCCSER2 
Exome Variant ServerCCSER2
ExAC (Exome Aggregation Consortium)CCSER2 (select the gene name)
Genetic variants : HAPMAP54462
Genomic Variants (DGV)CCSER2 [DGVbeta]
DECIPHERCCSER2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCSER2 
Mutations
ICGC Data PortalCCSER2 
TCGA Data PortalCCSER2 
Broad Tumor PortalCCSER2
OASIS PortalCCSER2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCSER2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCSER2
BioMutasearch CCSER2
DgiDB (Drug Gene Interaction Database)CCSER2
DoCM (Curated mutations)CCSER2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCSER2 (select a term)
intoGenCCSER2
Cancer3DCCSER2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCSER2
Genetic Testing Registry CCSER2
NextProtQ9H7U1 [Medical]
TSGene54462
GENETestsCCSER2
Huge Navigator CCSER2 [HugePedia]
snp3D : Map Gene to Disease54462
BioCentury BCIQCCSER2
ClinGenCCSER2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54462
Chemical/Pharm GKB GenePA165548597
Clinical trialCCSER2
Miscellaneous
canSAR (ICR)CCSER2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCSER2
EVEXCCSER2
GoPubMedCCSER2
iHOPCCSER2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:09:28 CEST 2017

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