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CCT6B (chaperonin containing TCP1 subunit 6B)

Identity

Alias_nameschaperonin containing TCP1
Alias_symbol (synonym)Cctz2
TSA303
Other aliasCCT-zeta-2
CCTZ-2
TCP-1-zeta-2
HGNC (Hugo) CCT6B
LocusID (NCBI) 10693
Atlas_Id 965
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 34927859 and ends at 34961509 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCT6B   1621
Cards
Entrez_Gene (NCBI)CCT6B  10693  chaperonin containing TCP1 subunit 6B
AliasesCCT-zeta-2; CCTZ-2; Cctz2; TCP-1-zeta-2; 
TSA303
GeneCards (Weizmann)CCT6B
Ensembl hg19 (Hinxton)ENSG00000132141 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132141 [Gene_View]  chr17:34927859-34961509 [Contig_View]  CCT6B [Vega]
ICGC DataPortalENSG00000132141
TCGA cBioPortalCCT6B
AceView (NCBI)CCT6B
Genatlas (Paris)CCT6B
WikiGenes10693
SOURCE (Princeton)CCT6B
Genetics Home Reference (NIH)CCT6B
Genomic and cartography
GoldenPath hg38 (UCSC)CCT6B  -     chr17:34927859-34961509 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCT6B  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblCCT6B - 17q12 [CytoView hg19]  CCT6B - 17q12 [CytoView hg38]
Mapping of homologs : NCBICCT6B [Mapview hg19]  CCT6B [Mapview hg38]
OMIM610730   
Gene and transcription
Genbank (Entrez)AK225728 AK225729 AK301773 AK302344 BC026125
RefSeq transcript (Entrez)NM_001193529 NM_001193530 NM_006584
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCT6B
Cluster EST : UnigeneHs.73072 [ NCBI ]
CGAP (NCI)Hs.73072
Alternative Splicing GalleryENSG00000132141
Gene ExpressionCCT6B [ NCBI-GEO ]   CCT6B [ EBI - ARRAY_EXPRESS ]   CCT6B [ SEEK ]   CCT6B [ MEM ]
Gene Expression Viewer (FireBrowse)CCT6B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10693
GTEX Portal (Tissue expression)CCT6B
Human Protein AtlasENSG00000132141-CCT6B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92526   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92526  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92526
Splice isoforms : SwissVarQ92526
PhosPhoSitePlusQ92526
Domaine pattern : Prosite (Expaxy)TCP1_1 (PS00750)    TCP1_2 (PS00751)    TCP1_3 (PS00995)   
Domains : Interpro (EBI)Chap_CCT_zeta    Chaperone_TCP-1    Chaperonin_TCP-1_CS    Cpn60/TCP-1    GroEL-like_apical_dom    GROEL-like_equatorial    TCP-1-like_intermed   
Domain families : Pfam (Sanger)Cpn60_TCP1 (PF00118)   
Domain families : Pfam (NCBI)pfam00118   
Conserved Domain (NCBI)CCT6B
DMDM Disease mutations10693
Blocks (Seattle)CCT6B
SuperfamilyQ92526
Human Protein Atlas [tissue]ENSG00000132141-CCT6B [tissue]
Peptide AtlasQ92526
HPRD09873
IPIIPI00220656   IPI00553070   IPI00908488   IPI00910226   
Protein Interaction databases
DIP (DOE-UCLA)Q92526
IntAct (EBI)Q92526
FunCoupENSG00000132141
BioGRIDCCT6B
STRING (EMBL)CCT6B
ZODIACCCT6B
Ontologies - Pathways
QuickGOQ92526
Ontology : AmiGOATP binding  cytosol  chaperonin-containing T-complex  protein folding  'de novo' protein folding  spermatogenesis  protein transporter activity  protein transport  protein binding involved in protein folding  unfolded protein binding  chaperone-mediated protein complex assembly  chaperone-mediated protein folding  toxin transport  
Ontology : EGO-EBIATP binding  cytosol  chaperonin-containing T-complex  protein folding  'de novo' protein folding  spermatogenesis  protein transporter activity  protein transport  protein binding involved in protein folding  unfolded protein binding  chaperone-mediated protein complex assembly  chaperone-mediated protein folding  toxin transport  
NDEx NetworkCCT6B
Atlas of Cancer Signalling NetworkCCT6B
Wikipedia pathwaysCCT6B
Orthology - Evolution
OrthoDB10693
GeneTree (enSembl)ENSG00000132141
Phylogenetic Trees/Animal Genes : TreeFamCCT6B
HOVERGENQ92526
HOGENOMQ92526
Homologs : HomoloGeneCCT6B
Homology/Alignments : Family Browser (UCSC)CCT6B
Gene fusions - Rearrangements
Tumor Fusion PortalCCT6B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCT6B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCT6B
dbVarCCT6B
ClinVarCCT6B
1000_GenomesCCT6B 
Exome Variant ServerCCT6B
ExAC (Exome Aggregation Consortium)ENSG00000132141
GNOMAD BrowserENSG00000132141
Genetic variants : HAPMAP10693
Genomic Variants (DGV)CCT6B [DGVbeta]
DECIPHERCCT6B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCT6B 
Mutations
ICGC Data PortalCCT6B 
TCGA Data PortalCCT6B 
Broad Tumor PortalCCT6B
OASIS PortalCCT6B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCT6B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCT6B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCT6B
DgiDB (Drug Gene Interaction Database)CCT6B
DoCM (Curated mutations)CCT6B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCT6B (select a term)
intoGenCCT6B
Cancer3DCCT6B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610730   
Orphanet
DisGeNETCCT6B
MedgenCCT6B
Genetic Testing Registry CCT6B
NextProtQ92526 [Medical]
TSGene10693
GENETestsCCT6B
Target ValidationCCT6B
Huge Navigator CCT6B [HugePedia]
snp3D : Map Gene to Disease10693
BioCentury BCIQCCT6B
ClinGenCCT6B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10693
Chemical/Pharm GKB GenePA26184
Clinical trialCCT6B
Miscellaneous
canSAR (ICR)CCT6B (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCT6B
EVEXCCT6B
GoPubMedCCT6B
iHOPCCT6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:06:37 CET 2017

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