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CCT6B (chaperonin containing TCP1 subunit 6B)

Identity

Alias (NCBI)CCT-zeta-2
CCTZ-2
Cctz2
TCP-1-zeta-2
TSA303
HGNC (Hugo) CCT6B
HGNC Alias symbCctz2
TSA303
HGNC Previous namechaperonin containing TCP1, subunit 6B (zeta 2)
LocusID (NCBI) 10693
Atlas_Id 965
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 34927861 and ends at 34961460 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CCT6B   1621
Cards
Entrez_Gene (NCBI)CCT6B    chaperonin containing TCP1 subunit 6B
AliasesCCT-zeta-2; CCTZ-2; Cctz2; TCP-1-zeta-2; 
TSA303
GeneCards (Weizmann)CCT6B
Ensembl hg19 (Hinxton)ENSG00000132141 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132141 [Gene_View]  ENSG00000132141 [Sequence]  chr17:34927861-34961460 [Contig_View]  CCT6B [Vega]
ICGC DataPortalENSG00000132141
TCGA cBioPortalCCT6B
AceView (NCBI)CCT6B
Genatlas (Paris)CCT6B
SOURCE (Princeton)CCT6B
Genetics Home Reference (NIH)CCT6B
Genomic and cartography
GoldenPath hg38 (UCSC)CCT6B  -     chr17:34927861-34961460 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCT6B  -     17q12   [Description]    (hg19-Feb_2009)
GoldenPathCCT6B - 17q12 [CytoView hg19]  CCT6B - 17q12 [CytoView hg38]
ImmunoBaseENSG00000132141
Genome Data Viewer NCBICCT6B [Mapview hg19]  
OMIM610730   
Gene and transcription
Genbank (Entrez)AK225728 AK225729 AK301773 AK302344 BC026125
RefSeq transcript (Entrez)NM_001193529 NM_001193530 NM_006584
Consensus coding sequences : CCDS (NCBI)CCT6B
Gene ExpressionCCT6B [ NCBI-GEO ]   CCT6B [ EBI - ARRAY_EXPRESS ]   CCT6B [ SEEK ]   CCT6B [ MEM ]
Gene Expression Viewer (FireBrowse)CCT6B [ Firebrowse - Broad ]
GenevisibleExpression of CCT6B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10693
GTEX Portal (Tissue expression)CCT6B
Human Protein AtlasENSG00000132141-CCT6B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92526   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92526  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92526
PhosPhoSitePlusQ92526
Domaine pattern : Prosite (Expaxy)TCP1_1 (PS00750)    TCP1_2 (PS00751)    TCP1_3 (PS00995)   
Domains : Interpro (EBI)Chap_CCT_zeta    Chaperone_TCP-1    Chaperonin_TCP-1_CS    Cpn60/TCP-1    GroEL-like_apical_dom_sf    GROEL-like_equatorial_sf    TCP-1-like_intermed_sf   
Domain families : Pfam (Sanger)Cpn60_TCP1 (PF00118)   
Domain families : Pfam (NCBI)pfam00118   
Conserved Domain (NCBI)CCT6B
SuperfamilyQ92526
AlphaFold pdb e-kbQ92526   
Human Protein Atlas [tissue]ENSG00000132141-CCT6B [tissue]
HPRD09873
Protein Interaction databases
DIP (DOE-UCLA)Q92526
IntAct (EBI)Q92526
BioGRIDCCT6B
STRING (EMBL)CCT6B
ZODIACCCT6B
Ontologies - Pathways
QuickGOQ92526
Ontology : AmiGOATP binding  cytosol  chaperonin-containing T-complex  chaperonin-containing T-complex  protein folding  protein folding  protein folding chaperone  unfolded protein binding  toxin transport  
Ontology : EGO-EBIATP binding  cytosol  chaperonin-containing T-complex  chaperonin-containing T-complex  protein folding  protein folding  protein folding chaperone  unfolded protein binding  toxin transport  
NDEx NetworkCCT6B
Atlas of Cancer Signalling NetworkCCT6B
Wikipedia pathwaysCCT6B
Orthology - Evolution
OrthoDB10693
GeneTree (enSembl)ENSG00000132141
Phylogenetic Trees/Animal Genes : TreeFamCCT6B
Homologs : HomoloGeneCCT6B
Homology/Alignments : Family Browser (UCSC)CCT6B
Gene fusions - Rearrangements
Fusion : QuiverCCT6B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCT6B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCT6B
dbVarCCT6B
ClinVarCCT6B
MonarchCCT6B
1000_GenomesCCT6B 
Exome Variant ServerCCT6B
GNOMAD BrowserENSG00000132141
Varsome BrowserCCT6B
ACMGCCT6B variants
VarityQ92526
Genomic Variants (DGV)CCT6B [DGVbeta]
DECIPHERCCT6B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCT6B 
Mutations
ICGC Data PortalCCT6B 
TCGA Data PortalCCT6B 
Broad Tumor PortalCCT6B
OASIS PortalCCT6B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCT6B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCT6B
Mutations and Diseases : HGMDCCT6B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCT6B
DgiDB (Drug Gene Interaction Database)CCT6B
DoCM (Curated mutations)CCT6B
CIViC (Clinical Interpretations of Variants in Cancer)CCT6B
Cancer3DCCT6B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610730   
Orphanet
DisGeNETCCT6B
MedgenCCT6B
Genetic Testing Registry CCT6B
NextProtQ92526 [Medical]
GENETestsCCT6B
Target ValidationCCT6B
Huge Navigator CCT6B [HugePedia]
ClinGenCCT6B
Clinical trials, drugs, therapy
MyCancerGenomeCCT6B
Protein Interactions : CTDCCT6B
Pharm GKB GenePA26184
PharosQ92526
Clinical trialCCT6B
Miscellaneous
canSAR (ICR)CCT6B
HarmonizomeCCT6B
DataMed IndexCCT6B
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCT6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:02:52 CEST 2021

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